Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01716 ATGACAAAAGAATATCCAGACTTGGACTATGGGAAATTGGTCATTGATGACTTGATCAGAGAAGGGTCGTACTATAATTTACACAAAGGATGGTATGAAGACCATCCTGTTGCTATTAAGATTTTTATCCCAGCAAGAACAGAGGATGCTCCACTGGAATATGAGGCCAAATTTCTGAGGGAGATCAAGCTGTTATCTAAGATTGAACATAGTAACATTATCAAGTTGATTGCAGCCTCTGCGGGACTAATGATAATCACAGAGCTCATGGAAGCTATGGAATATTTGCATGCAAATGGCATCGTTCACCGGGACCTCAAGCCTGGTAATTTACTGCTTACAAAGGATCGGAATCATGTTAAACTTGCTGGTTTTGAGGTTGCTAGAGATGATATATGTGATGAGATGACTTGTGAAGCTGGTACTTATCGATATATGGCTCCTGAGCAAATGAGCAAAGATCCACTTCCAAAGGGAGCCAAGATAAGCTATGATCATAAGGCAGATGTGTACAGTTTTGCACTAGTTCTTTGGTCTTTGATCAAAAATCAAATTCCATTTAAAGATAGGAAAGAATTAATGGCTGCTTATGCTACAAAAACCAATATAAGGCCAAGTTTGGATGAACTTCCTGAAGATATAGTTCCTTTGCTGCAATCCTGTTGGGTAGAAGATCCAAAACTCCGTCCAGAATTCAAGGAAATCACTGAAATACTGAGAAAGATTCTTCTAAATATTTACACCCCAAAGATTAATTCACTTGTTGGAGGGAATGCAAAAGCTGGTAGCAAAAGTGAGGCAGATTCCTCAAAAGATAATGAAAACATTCTCAAACATGATACTAAGATCATAGAACCAAACGACGGAAAAGACATTACTCACTCTCCTACGATGGATGAGATATGGTTCAAAAATGTGGTTAGAAGTGGATTTCAATCTCGATCTCCATTTCAATCTCAATCTGAGCTTCAGAGTGGAGCACAAATGCCAATCGATAACTTGGCTGAAAAGAAACATAAAAAGAAAAGTATGATTACGCGTTTCTTTTATTATTTTCGTAATTCAATTATGGCATGCCTTACATCAAGTGTGCATTAA 1098 0.378 MTKEYPDLDYGKLVIDDLIREGSYYNLHKGWYEDHPVAIKIFIPARTEDAPLEYEAKFLREIKLLSKIEHSNIIKLIAASAGLMIITELMEAMEYLHANGIVHRDLKPGNLLLTKDRNHVKLAGFEVARDDICDEMTCEAGTYRYMAPEQMSKDPLPKGAKISYDHKADVYSFALVLWSLIKNQIPFKDRKELMAAYATKTNIRPSLDELPEDIVPLLQSCWVEDPKLRPEFKEITEILRKILLNIYTPKINSLVGGNAKAGSKSEADSSKDNENILKHDTKIIEPNDGKDITHSPTMDEIWFKNVVRSGFQSRSPFQSQSELQSGAQMPIDNLAEKKHKKKSMITRFFYYFRNSIMACLTSSVH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01716 365 ProSiteProfiles Protein kinase domain profile. 1 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01716 365 Pfam Protein kinase domain 85 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01716 365 SUPERFAMILY Protein kinase-like (PK-like) 9 245 IPR011009 -
Trre16g01716 365 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 248 - -
Trre16g01716 365 Gene3D Phosphorylase Kinase; domain 1 5 83 - -
Trre16g01716 365 Gene3D Transferase(Phosphotransferase) domain 1 84 278 - -
Trre16g01716 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Trre16g01716 365 SMART serkin_6 13 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01716 Trre-Chr16 13696150 13702985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01716 8 281 MAP Kinase Kinase Kinase AT5G66710 43.648 7.69e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre16g01716 Pkinase 1.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01716 - K04427 ccaj:109787878 287.345