Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01710 ATGGGCCGTCGTAAAATTCCGATTGCGAGGGTGAAAAACTCCGCTGCGAGGCAAGTTACATTCTCCAAACGTCGAACAGGGTTATTCAACAAAGCAAATGAACTTGTGACCTTGTGCGGGGCAGAAATTGCCATTATTGTGTTCTCCCCGGGAAATAGGCCTTATTCTTTTGGGCATCCGTGCGTTGAAGCTATTGCATCCAGGATTGTTGAACAAGAGCCAAATCCAAATGATGAAATAGAAAATTCATCTTCTGACATCGACAATCTGAGCCAACAACTTGGTGATGTTTTGGCCAAAATAGATGAAGCTGAAAAGGAAGCTAAGCTCCATGATGAAATGCTAAAAGAATACAAGAAGGTGGTGCAATTCACTCAACTTAAGGAGTCATTTATTGAGCTTAAGGATATGATAAAATCACGTATTTGTGATTTAGATATATCAAAGTCTATGCTGCTTCTGGCAAAGGAACCAATTATTTGGAATTAA 489 0.4008 MGRRKIPIARVKNSAARQVTFSKRRTGLFNKANELVTLCGAEIAIIVFSPGNRPYSFGHPCVEAIASRIVEQEPNPNDEIENSSSDIDNLSQQLGDVLAKIDEAEKEAKLHDEMLKEYKKVVQFTQLKESFIELKDMIKSRICDLDISKSMLLLAKEPIIWN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01710 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g01710 162 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Trre16g01710 162 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre16g01710 162 PANTHER MADS BOX PROTEIN 3 134 - -
Trre16g01710 162 Coils Coil 87 121 - -
Trre16g01710 162 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trre16g01710 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre16g01710 162 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g01710 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g01710 162 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01710 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01710 Trre-Chr16 13673762 13674250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01710 1 149 Type I MADS-box Gene Family AT2G24840 37.126 1.48e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g01710 SRF-TF 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01710 - - psat:127135568 204.912