Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01708 ATGTCATTCTCATGTGTCAAGAAAATTTTCATGAGGTTTTGGGTTGATGAATTCCAAACTGATCTCTTGCCATCTCTTGGAGCAAGAATCAACCAAGAAATTGAACTAAAAAGATACATAATCTCCCCCTTCAATCCAAAGTATAGGACTTGGGAGACATGGTTGATAGTTCTAGTGGTTTACTCTGCATGGATATACCCCTTTCAATTTGCATTTCTACCTTATAAGATTGACACACTATTCATCATAGATAACATTGTGAATGGTTTCTTTGCCATTGACATATTGATGACATTCTTTGTTGCATATCTTGATGACCATTCTTACCTTCTTATTGATGATCATAAGAAAATTGCAGTCAGGTACTTATCTACCTGGTTTATCTTTGATGTTTGTTCAACTGCACCTTTTCAATCTATTAGCTCCTTATTCACCGATAGTAGCAACGATATTGGATACAAAGCTCTTAACATGCTTCGGTTATGGCGTCTCAGACGAGTCAGTTCTCTGTTTGCAAGACTTGAGAAAAACATTCACTACAATTACTTTTGGACTAGGTGCTCGAAGCTCATTGCTGTGACCTTGTTTGCAGTACACTGTGCTGGATGCGTTAACTATTTAATTGCAGATAGTTACCCTGATTCAAAAAGGACATGGATTGGTTCTGTGTACCCAAATTTTAAAGAAATGAGTCTTTGGGATAGATATGTGACATCAATGTATTGGTCAATTGTGACACTAACTACAACTGGATATGGAGATTTGCATGCTAATAACACTAGGGAGATGCTGTTTGATATTTTCTACATGTTGTTCAATTTGGGATTAACAGCTTATATCATTGGAAACATGACAAATCTTGTTGTTCAATGGACAAGTCACACCAGAAATTTTAGAGATACAGTCAGAGCAGCTTCAGAATTTGCGAAAAGAAATCATCTTCCTCATGATAAACAAGATCAAATATTATCATATTTATGTTTAAGGTTCAAAACAGAAGGATTAAAGCAGCAAGAAACAATAAATTGCATGCCGAAAGCAATTCGCGCAAGCATTACACATCATTTGTTTTTTCCTATTGTTCAGAATTCATACCTCTTTCAAAGAGTTTCACCTGACTTTCTTTTTCAACTGGTTACAGAAATGGAAGCAGAGTATTTTCCACCAAAAGAAGATGTTATGTTACAAAATGAGTCTCCAACAGATCTTTACATGTTGGTTTCAGGAGCAGTGGAACTCATTCACAATGTCGATGGTCGTGATCAAGTTTTGCAGACGGAAATAAGTGCAGGAGATACAATTGGAGAGATTGGAGTCTTATACAATAGACCACAACCTTTCACTGTTAGGACCAAAAAGCTTTCACAAATTTTAAGACTTAGCAGAACTTCATTGATGAATGCCCTTCATGCAAATCCAGAAGCTGCACCAATTATAATGACAAATCTTTTTATGAGATTAAATGGACAAGAAGATTTGGGTTTTGAATATCCACCTAAAGACACTAAATTGGCACTTCATGGCATGCATGTTGTGAGCAACACAATTGGAAATTCATGTCTTGAATGTACAAAAAACTCACATAGATTATTATATGATATGATGCCTAACAAGGATGAAAACCAGCCAGAACAAGAAGAAAATGAAAAGAACCTAAGTCCTGTTAGATGGAAACAGAAAGAAATAGAAGAAAAGCAACAAAACAAGAGTCATGAAAATGGAAAGAAATTAGATGAACATATAATAGAGTTTATGGAGACAGATGTTAGGAGTGACCAAATTTCATTAGGAACAAGTAATCATCCAATTGAGAGAAAAAAAGAAATTTTTGTCAATAAGAGAGTTACCATTCACTATCTAGGCCAAGACAAAGCTACCTTACAAGGACAACATGGAAAGTTAATAATTCTACCTGATTCATTGGAAGAGCTTCTCAAGATTGTTGGAGAAAAGTTTGGAGGGCCAAAGCCTAACAAAATAATGAATGCAGATAATGCAGAGATAGATGACTTGTTTGTCATTCGAGATGGTGACCATCTGTTTTTCCGTTGCAGCGACAATGAATTTTTGAGCTAA 2076 0.3555 MSFSCVKKIFMRFWVDEFQTDLLPSLGARINQEIELKRYIISPFNPKYRTWETWLIVLVVYSAWIYPFQFAFLPYKIDTLFIIDNIVNGFFAIDILMTFFVAYLDDHSYLLIDDHKKIAVRYLSTWFIFDVCSTAPFQSISSLFTDSSNDIGYKALNMLRLWRLRRVSSLFARLEKNIHYNYFWTRCSKLIAVTLFAVHCAGCVNYLIADSYPDSKRTWIGSVYPNFKEMSLWDRYVTSMYWSIVTLTTTGYGDLHANNTREMLFDIFYMLFNLGLTAYIIGNMTNLVVQWTSHTRNFRDTVRAASEFAKRNHLPHDKQDQILSYLCLRFKTEGLKQQETINCMPKAIRASITHHLFFPIVQNSYLFQRVSPDFLFQLVTEMEAEYFPPKEDVMLQNESPTDLYMLVSGAVELIHNVDGRDQVLQTEISAGDTIGEIGVLYNRPQPFTVRTKKLSQILRLSRTSLMNALHANPEAAPIIMTNLFMRLNGQEDLGFEYPPKDTKLALHGMHVVSNTIGNSCLECTKNSHRLLYDMMPNKDENQPEQEENEKNLSPVRWKQKEIEEKQQNKSHENGKKLDEHIIEFMETDVRSDQISLGTSNHPIERKKEIFVNKRVTIHYLGQDKATLQGQHGKLIILPDSLEELLKIVGEKFGGPKPNKIMNADNAEIDDLFVIRDGDHLFFRCSDNEFLS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01708 691 Pfam KHA, dimerisation domain of potassium ion channel 613 682 IPR021789 -
Trre16g01708 691 PANTHER POTASSIUM CHANNEL AKT1 18 542 IPR045319 GO:0005249|GO:0006813
Trre16g01708 691 CDD CAP_ED 366 476 IPR000595 -
Trre16g01708 691 SMART cnmp_10 366 484 IPR000595 -
Trre16g01708 691 Pfam Cyclic nucleotide-binding domain 386 470 IPR000595 -
Trre16g01708 691 SUPERFAMILY cAMP-binding domain-like 293 487 IPR018490 -
Trre16g01708 691 MobiDBLite consensus disorder prediction 537 557 - -
Trre16g01708 691 ProSiteProfiles KHA domain profile. 614 691 IPR021789 -
Trre16g01708 691 FunFam Potassium channel KAT2 354 491 - -
Trre16g01708 691 Gene3D Helix hairpin bin 290 356 - -
Trre16g01708 691 Gene3D - 49 289 - -
Trre16g01708 691 ProSiteProfiles cAMP/cGMP binding motif profile. 366 486 IPR000595 -
Trre16g01708 691 FunFam Potassium channel KAT3 50 290 - -
Trre16g01708 691 Pfam Ion transport protein 49 295 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre16g01708 691 PRINTS EAG/ELK/ERG potassium channel family signature 236 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g01708 691 PRINTS EAG/ELK/ERG potassium channel family signature 95 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g01708 691 PRINTS EAG/ELK/ERG potassium channel family signature 84 94 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g01708 691 PRINTS EAG/ELK/ERG potassium channel family signature 262 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g01708 691 PRINTS EAG/ELK/ERG potassium channel family signature 280 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre16g01708 691 Gene3D Jelly Rolls 359 488 IPR014710 -
Trre16g01708 691 SUPERFAMILY Voltage-gated potassium channels 43 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01708 Trre-Chr16 13649987 13657361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01708 1 682 Ion Channels AT5G46240 58.321 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01708 K21867 - gmx:100800340 985.326