Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01707 ATGGTTGAGGAAAATCAGCCTATTGATGCTAGTCCTAATGAAATCTACTCTTTCACTAAGATGCTGGAAACAAGTACACATGCTGCTGCACTTTATATTCCAAAGGAACATGCAGAAAGATGCTTCCCCCCACTGGATATGGCTGTTCAACCACCAATGCAAGATCTAGTGGTGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACACATTTACTGTGATCATCAGAAAGCTCACTTCCTTACGAGTGGTTGGAGCACGTTCGTAAATTCTAAAAAACTTGTTCCTGGAGATTCATGCATTTTTGCCAGAGGAGAGAACGGCGAAATTGGTATTGGAATTCGTCGAGCAATGAAACAACATAGTGATATATTGAAAACATCATCTCCACTTGAATCAATGTGTATTGCTTCTCATGCTGTTTCTACAGGAACTATGTTCCATGTCCAGTACTACCCTTGGATTACTCCCTTTGAGTTTATGATCCCTCTGAAAACTTATGTTGAGTCTATTGAAAGAGACCACTTCTTTGGAATGAGGGTGCGTATGCTATCCAAAGTCGAAGGATCTTCCAACAGATATGGTACAATTGTTGGGAATGAAGATTTTGATCCCATTAGATGGCCTGGATCTGCATGGAGATGTATCAAGGTGCAATGGGATTCCATACCACCAAATACTTTTACACAACTTGAAAGGGTTTGTCCTTGGTGGATTGAGCCTTTGGAATCTCCCAAGATTAAGGGCTTTCCTACTCTACCTTTATCAAATGAGGCTATTGGGAGTTCATCCACACCTGAAAATCACATTGTGGATATCAAGATGCAAGGTCAAAAACATTACAATACTGGAAATGCTGAAAAATCCCTCTTCATTGTTGCTTTCTTTATATTACTTTGCTGTTTTACATTTGTGATTTTCGCCTTTCGTCCGCTTCTGTAA 942 0.4002 MVEENQPIDASPNEIYSFTKMLETSTHAAALYIPKEHAERCFPPLDMAVQPPMQDLVVKDLHGIEWNFRHIYCDHQKAHFLTSGWSTFVNSKKLVPGDSCIFARGENGEIGIGIRRAMKQHSDILKTSSPLESMCIASHAVSTGTMFHVQYYPWITPFEFMIPLKTYVESIERDHFFGMRVRMLSKVEGSSNRYGTIVGNEDFDPIRWPGSAWRCIKVQWDSIPPNTFTQLERVCPWWIEPLESPKIKGFPTLPLSNEAIGSSSTPENHIVDIKMQGQKHYNTGNAEKSLFIVAFFILLCCFTFVIFAFRPLL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01707 313 Gene3D - 15 118 IPR015300 -
Trre16g01707 313 CDD B3_DNA 17 116 IPR003340 GO:0003677
Trre16g01707 313 SMART B3_2 18 118 IPR003340 GO:0003677
Trre16g01707 313 Gene3D - 176 246 - -
Trre16g01707 313 Pfam Auxin response factor 137 217 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre16g01707 313 SUPERFAMILY DNA-binding pseudobarrel domain 8 123 IPR015300 -
Trre16g01707 313 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 280 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre16g01707 313 ProSiteProfiles B3 DNA-binding domain profile. 16 118 IPR003340 GO:0003677
Trre16g01707 313 Pfam B3 DNA binding domain 25 117 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01707 Trre-Chr16 13638558 13642326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01707 2 245 B3 DNA Binding Superfamily AT5G62000 45.098 4.26e-68 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre16g01707 B3 2e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01707 - - tpra:123888364 508.449