Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01696 ATGGCTTCCGAGAAGAAACTCTCGAACCCCATGAGGGAAATCAAGGTTCAGAAACTCGTTCTCAATATCTCTGTTGGTGAAAGTGGCGATCGTCTCACCAGAGCCGCTAAGGTGTTGGAACAACTAAGTGGTCAAACTCCTGTGTTTTCTAAAGCAAGATACACTGTCCGTTCTTTTGGTATTAGAAGAAATGAGAAGATCGCATGCTATGTCACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAATTGCTGAGAAGAAACTTTAGTGATACCGGGTGTTTTGGATTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCTACCGGTATCTATGGGATGGACTTCTTTGTTGTTCTGGAGCGCCCTGGTTACAGGGTGGGACGTCGTCGTAGGTGCAAGGCTCGTGTTGGGATCCAACATCGTGTCACAAAGGATGATGCTATGAAGTGGTTCCAAGTGAAATATGAAGGTGTGATCCTCAACAAGTCACAGGCAATTGTTTAG 546 0.4451 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAIV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01696 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Trre16g01696 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Trre16g01696 181 FunFam 60S ribosomal protein L11 2 174 - -
Trre16g01696 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trre16g01696 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Trre16g01696 181 SUPERFAMILY RL5-like 8 173 IPR022803 -
Trre16g01696 181 Gene3D - 2 177 IPR022803 -
Trre16g01696 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01696 Trre-Chr16 13558843 13560671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01696 1 181 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 96.133 3.26e-130 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01696 K02868 - fve:101302044 340.502