Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01682 ATGTCTATCGCAAACGTATTGGAGTGGAAAGGTTGCGACTCAGAAGATGCAATTAATCTGGTTGAGTTGTGTTGTCTCTGCAGTACAAAAGCTACAAGTAAACAAGCGCTTCTTCTCCATGCTGAAGGAAAGAAACATGCGGCAAAAGCCCGAGCCTTCCATGCTTCGCAGCAGCCACCAGTCCAGACGGATAAACCTGCCCCTGATGCAAAGGATGCCGTGGAGACTGCTTCTAATGGCACGGCAAAAGATGACAAAAATGCAGAGCAGCCAAAATTGCAAGAGTCTTCTGAACAAAATAACTTGAAACCAGGGAGTGAATGTTATGTGTTCTCCTGCATTGCTATGATATCGCGCCACCGTTCTCCTTCATCACAAAACCCAATCGCCGCCGTTGTCCTTCAGCCGTCGTTCTCCATCGGCGTTTTGTTCATCTTCCATAAGGCCAAGGTAGCACCTCTGCTTGCCAGATCCAACTTGCTAATTACAAGAGCTATCGAGTGGGTAAATCTTGTTTTGGGATTTGAACAGGAACAAAGAGATGGACGGTCTTACAATAGAGGAGACATGTATGAAATCTCTCACACGAAGAGAAACGGATCATATGTTAATGATGAGGCTCGACAAAAAAATGAAGAGTTACAAAAAGAAAGGCAGACATCATCCGATAATGAGGCTTTTGTGACCGTGTTTGGGAAAGAGCATCATGGTTATGTTCGAGGAATGAGACTTGGTCCAACACCATCTCAAATTAATGGTTCTAGTTGTCGTCTTTCAGGATCAACTTCTTCATCGACTGCTGATGCCAAAATAGCTAAGATGCTAAGCGAAATTGATGTGCTAACTAAAGAAGTTGCTGAAGTTAATGAGCTTAAAGCTAAAGTTGTTGAATTTGATGCAATGAAGGAACAATTTGCTCTTATTATGGCTAATATGCAAAACCATGGGTCTAGCATAGGATCACCGTTTGAAGTACGACGCTCTTCTGAGTCTAGTCATAATGTTGAGGGTGATCAAGCAACTCCGGACGATTAA 1035 0.4329 MSIANVLEWKGCDSEDAINLVELCCLCSTKATSKQALLLHAEGKKHAAKARAFHASQQPPVQTDKPAPDAKDAVETASNGTAKDDKNAEQPKLQESSEQNNLKPGSECYVFSCIAMISRHRSPSSQNPIAAVVLQPSFSIGVLFIFHKAKVAPLLARSNLLITRAIEWVNLVLGFEQEQRDGRSYNRGDMYEISHTKRNGSYVNDEARQKNEELQKERQTSSDNEAFVTVFGKEHHGYVRGMRLGPTPSQINGSSCRLSGSTSSSTADAKIAKMLSEIDVLTKEVAEVNELKAKVVEFDAMKEQFALIMANMQNHGSSIGSPFEVRRSSESSHNVEGDQATPDD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01682 344 Coils Coil 271 291 - -
Trre16g01682 344 MobiDBLite consensus disorder prediction 319 344 - -
Trre16g01682 344 Pfam Plant transposase (Ptta/En/Spm family) 176 248 IPR004252 -
Trre16g01682 344 MobiDBLite consensus disorder prediction 49 102 - -
Trre16g01682 344 MobiDBLite consensus disorder prediction 329 344 - -
Trre16g01682 344 Coils Coil 204 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01682 Trre-Chr16 13425165 13435295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01682 23 93 C2H2 Transcription Factor Family AT2G19380 42.254 2.24e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01682 - K15263 tpra:123887282 293.508