Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01670 ATGGAGGGTTTTCTGAATCCGAAAGACTTGGAATTAGATGGTAAGAATAGGAGTATCGAAGCGCTACAAAGTTGGAGAAGTGCCGTCTCGTTGGTGAAGAATCCCCGTAGAAGATTCCGACATGCAGCCGATTTGATAAAACGTCGCGAAGCAGAAGAAATGCAGGCAAAAATTCGGGGCAGGATGGAGGCTGTAATACGTGTTCAAAGAGCTGCTTTGCACTTTACAGATGAAATTTCTGTAAAAGATCAAGATCAAGTGATTAATAGTCAAGCTAGTTTTGACATTGATCCAGACAAAATTGCATCACTAGTTCATAACTATGATATAAATTGTTTGAAAATTATTAATGGCGTTGAAGGCCTTGCAAGGAAACTTCATGTCTCAGTGGTAAATGGTGTTAGTGACTATAGCATAAATTCACGGCAACACTATTTTGGTGTCAACAGCTATGCAGTAAAACACTCTAAATCTTTTCTGACATTTGTATGGGAATCACTGCAAGATTCAACACTCATTTTCCTCACGGTTTGTTCCATAGTATTAATAGGTGCAACAGTTGCCACTGAAGAATGGCCAGTAAATATATATGATGAGGTGGGAATAATACTCGCTGTATTCTTTTTAGTCATCTTTACAGCTTTCAATGATTACCACCAATCATTGAAGTTTGCCGAATGGGACAGAGAGAACAAAAATATTTCTGTTCAGGTCACTAGGAATGGGAAAAGACAAAAGATATCAATTTACGACCTCCTAGTAGGAGACATTGTTCACTTGTCAATTGGGGATCAAATACCTGCTGATGGGATTTACATATCAGGTGATAGTTTACAGATTGACAAATCAAGTTTAACAGGTCAGTTTGAACCAGCTAATGTAAATCAAGAACAGCCTTTTCTAGTTTCGGGAACCAAAGTGATAGATGGGTCAGGGAAGATGCTAGTCGCAGCTGTTGGTATGAGGACTGAATGGGGAACGTTAGTGGAAGTTTTGAATGACAGAGGAGTGGATGAAACACCATTGCAGGTGAAAATGAATGGAGTTGCTACTTTTGTTGGTAAGATTGGCTTGAGTTTTGCTCTTCTGACATTTATCGTGTTGATCATACGATTTCTTGTGGAAATTGTGATTCGTGGCGAGTTTACTAATTGGTCCACAAAAGATGTTATGAAGCTGCTGAACTACTTCACTGTAGTTGTTACAATGATAGTCATTGCTGTTCCTGAAGGTTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAACAAAAAGCTTAACGAGTCAAAGAGCACTAGTGAGGCATCTTTCTGCATGTGAAGCAATGGGTTCTGTTAGTTATATTTGTTTAGATAAGACAGGGACGGTGACCTCTAATCACATGATGGTTGATAAATTATGGATATCTGGCGAAGTTGTGGAGATGACAGGTAATAACGGTGACATACTGAAAAAAAAGATATCTGAAGAAGTTCTAAACATACTTTTGCAGGCTTTATTCCAAAATAATGCTTCTGAAATGGTTAAGGATAAACAAGGAAAGATCACAGTATTGGGAACTCCAACAGATTCAGCATTGTTGGAATTTGGCTTGCTTTTAGGGGGTGATTTTGATGTCCAATGCAGATTGTACAAGAAACTTAAGACTGAGCCTTTTAATCCTGTCCAGAAGAAGATGAGTGCCCTTGTTGGTCTTCCAAATGGAAGACAGAGAGTTTTCTGTAAAGGTGCTTCTGAAATAATATTAAAAATGTGTGACAAAATAATTGACTGCAATGGAATCCCTGTTGCTTTCCTTGAAAACCATGCTAAGAAATTGAATCATATTATAAATGCTTTTGCAACTGAAACTTTAAGAACTATTTGTATAGCTATCAAAGATGTAAATGCAATCCCTACTGAAGCAAGCATCCCTGATAATGGCTACACACTGATAGCTGTTGTCGGAATCAATGATCCTATACGCCTTGGTGTCAAAGACGTTGTTCAAACTTGTTTAGCAGCTGGAGTGACCATTGCTATGGTTACCGGTGATGATATGAACGTAGCCAGGACTATTGCTACTGAATGTGGTATACTCACCAATAGTGATTCAAGTCATTCAACCATAGAAGGACAACGATTTCGGAACTTGTCTACATGGGAAATGGAGGATATCATACCAAGTATTCAGGTGATGGCACGATTCGTACCACATGACAAATACTCTATCGTAGCTAATTTGAAGAAGGTGTTTGGTAAGGTTGTCGCTGTTACTGGTGATGGAATCAGTGATGCTCCTGCACTGCATGAGGCAGACATTGGAGTTGCCATGGGATTATCAGGATCCGAGGTTGCCAAAGAAAATGCTGATATAATTTTAATGGATGACAACATCGCAACTATTGTATATATCATCAAATGGGGACGTGCGGTATACATAAACATTCAAAAATTAGTGCAGTTTCAGTTAACAGCCATTATTGTTTCTCTGGTGATCAACTTTATTTCTGCTGCAGTAACCGGATATGTCCCCCTAACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGGACATTCTCTGTCCTTTGGCTCTCGTCACCGAGTCACTTAATGATGAACTTATGATGAGGCCTCCGGTGGGACGTGGAGCAAAGTTTATCACTAAAGCCATGTTGAGGAATATTATTGGCCAAAGCATATATCAAATTATTGTCCTTATGGTTCTTAATTTTCAAGGGATGAATATACTGAGTATAAATGGTTCATATGCAACTGATGTGCTCAGAACTTTGATTTTCAATTCCTTTATATTTTTTCAGGTGTTCAATGAAATAAATTGCAGAGAGATGGAAAAAATAAACATTTTCAGAGGCATTTTCAACAGCTGGACATATATGGTTATTATTTCATCAACAGTTGCAATTCAAGTAATCATAGTGCAGTTCCTCGGAAGTTTCGCCCGTACAGTACCTCTGAACTTGGAACTTTGGTTGGTTAGTGTTTTAATTGGTGCCACTAGCATGCTTATAGCTTCTCTTCTGAAGTGTATCTCAGTTGAAAGAGGTGTAAATAATCAACATCACGGTTACCAGCCACTACCTACTAGGTAG 3096 0.3876 MEGFLNPKDLELDGKNRSIEALQSWRSAVSLVKNPRRRFRHAADLIKRREAEEMQAKIRGRMEAVIRVQRAALHFTDEISVKDQDQVINSQASFDIDPDKIASLVHNYDINCLKIINGVEGLARKLHVSVVNGVSDYSINSRQHYFGVNSYAVKHSKSFLTFVWESLQDSTLIFLTVCSIVLIGATVATEEWPVNIYDEVGIILAVFFLVIFTAFNDYHQSLKFAEWDRENKNISVQVTRNGKRQKISIYDLLVGDIVHLSIGDQIPADGIYISGDSLQIDKSSLTGQFEPANVNQEQPFLVSGTKVIDGSGKMLVAAVGMRTEWGTLVEVLNDRGVDETPLQVKMNGVATFVGKIGLSFALLTFIVLIIRFLVEIVIRGEFTNWSTKDVMKLLNYFTVVVTMIVIAVPEGLPLAVTLNLAFATKSLTSQRALVRHLSACEAMGSVSYICLDKTGTVTSNHMMVDKLWISGEVVEMTGNNGDILKKKISEEVLNILLQALFQNNASEMVKDKQGKITVLGTPTDSALLEFGLLLGGDFDVQCRLYKKLKTEPFNPVQKKMSALVGLPNGRQRVFCKGASEIILKMCDKIIDCNGIPVAFLENHAKKLNHIINAFATETLRTICIAIKDVNAIPTEASIPDNGYTLIAVVGINDPIRLGVKDVVQTCLAAGVTIAMVTGDDMNVARTIATECGILTNSDSSHSTIEGQRFRNLSTWEMEDIIPSIQVMARFVPHDKYSIVANLKKVFGKVVAVTGDGISDAPALHEADIGVAMGLSGSEVAKENADIILMDDNIATIVYIIKWGRAVYINIQKLVQFQLTAIIVSLVINFISAAVTGYVPLTAVQLLWVNLIMDILCPLALVTESLNDELMMRPPVGRGAKFITKAMLRNIIGQSIYQIIVLMVLNFQGMNILSINGSYATDVLRTLIFNSFIFFQVFNEINCREMEKINIFRGIFNSWTYMVIISSTVAIQVIIVQFLGSFARTVPLNLELWLVSVLIGATSMLIASLLKCISVERGVNNQHHGYQPLPTR 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01670 1031 Gene3D - 17 77 - -
Trre16g01670 1031 Gene3D - 460 654 IPR023299 GO:0000166
Trre16g01670 1031 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre16g01670 1031 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 659 IPR023299 GO:0000166
Trre16g01670 1031 FunFam Calcium-transporting ATPase 770 1016 - -
Trre16g01670 1031 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Trre16g01670 1031 SUPERFAMILY Calcium ATPase, transduction domain A 235 330 IPR008250 -
Trre16g01670 1031 Gene3D - 133 333 - -
Trre16g01670 1031 SFLD C1.7: P-type atpase like 432 805 - -
Trre16g01670 1031 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Trre16g01670 1031 SUPERFAMILY HAD-like 448 856 IPR036412 -
Trre16g01670 1031 Gene3D - 165 1012 - -
Trre16g01670 1031 Gene3D - 447 798 IPR023214 -
Trre16g01670 1031 Pfam Cation transporter/ATPase, N-terminus 118 181 IPR004014 -
Trre16g01670 1031 PANTHER CATION TRANSPORTING ATPASE 86 1014 - -
Trre16g01670 1031 SFLD p-type atpase 432 805 IPR044492 -
Trre16g01670 1031 Pfam E1-E2 ATPase 234 428 - -
Trre16g01670 1031 Pfam Ca2+-ATPase N terminal autoinhibitory domain 11 50 IPR024750 GO:0005516
Trre16g01670 1031 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1013 IPR023298 -
Trre16g01670 1031 Pfam Cation transport ATPase (P-type) 504 589 - -
Trre16g01670 1031 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01670 1031 PRINTS H+-transporting ATPase (proton pump) signature 724 740 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01670 1031 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01670 1031 PRINTS H+-transporting ATPase (proton pump) signature 607 625 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01670 1031 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Trre16g01670 1031 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Trre16g01670 1031 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Trre16g01670 1031 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Trre16g01670 1031 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Trre16g01670 1031 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Trre16g01670 1031 FunFam Calcium-transporting ATPase 211 333 - -
Trre16g01670 1031 NCBIfam HAD-IC family P-type ATPase 721 843 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01670 1031 NCBIfam HAD-IC family P-type ATPase 202 472 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01670 Trre-Chr16 13331629 13336272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01670 54 1030 Primary Pumps ATPases AT3G57330 57.755 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01670 K01537 - gmx:100785768 1249.96