Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01659 ATGGCAAAAAAACTTCCACATTCACAACACCTACTCCTTCTAATCTTATTCCTTTCTACCATCCATTTTTCACAACAATTACAATATTCTCAATCTCAAACACTTCTCAAACTTCAACAACTTCTTGGTTACCCTTCAACATTAACAACCTTAAGTAACACCAATGATTTCTGCAACATTGAACCTACACCTTATTTAACATTAGTATGCTATGAAGACAATTTAACACAGTTGCATGTTGTTGGAAACAAAAATGAGTTCACTTCATTGCCTCAAAATTTCAACTCATACACACTTTTTTCAACACTTTCATCTCTTTCAAGTTTGAAAGTTCTCTCTTTAGTTTCTCTTGGTTTATGGGGTCCTTTACCTGAAACCATAGCTCAATTATCTTCATTGGAAATACTAAACATTACTTCAAATTATTTCAGTGGAGTTATACCATTTCACCTTTCATATCTTAATAATCTTCAATCATTAGTACTTGATGATAACAATTTCAATGGTGAAATTCCAAATTTAGGTTCACTTCAAGGTTTGGTTGTGCTTAGTATGAAGAAAAATTTCCTTAGTGGTAACTTACCAAATTCATTGAATAATCTTGTTACTCTTAGAGTTTTAGATCTATCAAATAATCAATTATTTGGTGAATTACCTCATCTTCATAATTTGGTTAATCTTCAAGTTCTTCACTTAGAGAATAACACATTAGGACCTCATTTTCCATCACTTCCTACAAAGTTAATTTCACTTGTGATTAGAAACAATAGTTTTCGACTCGGTGTACCGTCTAATATAAGTTCTTTCTATCAACTTCAAAAATTAGACCTTTCTTTGAACGGTTTTGTCGGGCCGTTTCCGGCGTCTTTATTGTCGTTACCTTCGATTAACTACCTTGATGTTTCTTCAAATAAGTTCACTGGTATGCTTTTCAAGAATTTTTCATGCAATGATGATCTTAAATTTGTGAATTTGTCTTCAAATTATTTGAAAGGTGAACTACCTAGTTGTTTGAGACCAAAGAAAACAAAGGTTGTTTTGTATGCTGGAAATTGTTTATCAAATGTGAAACAAGATCAACATAGTTACAATTTTTGCAGTAGTGAAGCTTTAGCAGTGAATATAACACCTCATCAAGAACAGAAACATAAGGGAACAGCAAATAGAACAGTACTTGTTTCATCAAGTTTAGGAGTTATTGGAGTAATTATTGTTGCTCTTGTTATCTTTGTTGTTAATGAAGTTCATAAGAAAAATGTTATGAAAAAGACTTCAATGTCTACATTGGAGGATGTTATACAGAATGAAGAAAAAGAGAAAACTACTGCAAGGTCTATAGTGGAGAATATTATCAAAAAGGTTCCTGATAAACAAGCTGTGAAAACACTGACAAAATCCATAAAGGAACAGATAGTTAGCCGAGTCGGTAATAGGCGCCATGTGAGGAGGCCTTCGAGGTCCATCATTGAACATGTATCATCAGTAAACACTGCAAAGCTACTCACAGATGCAAGGTGTATATCTGAAACAATGAAGATGGGAACTGGTCTTCCTGCTTATAGGACTTTTGCTTTGGACCAACTTAAGGAAGCTACAAATAATTTTGATGAATCAAGTCTCATAAGTGAAGGTCCACTTGGTCAGATATATAAAGGGGTTCTTTCTGATGGGATGAATATTACTATTAGAGGAATGAAGATAAGAAAGAAGCACAGCCCTCAGGCCTATATGCACCATGTTGAGTTGATTTCAAAACTTAGGCATTCACACTTGGTTAGTTCACTTGGACATTCTTTTGAGTGCAACCAAGAAGATTCAAGTGTCAACACTATATTTCTCATATTTGAGTTTGTTCAAGACAAAAGTTTAAGAAGCCGTGTCTCCGGATCAAATGGAGAAAAGCTTGGTTGGACACAAAGAATAGCAGCCACTATCGGAGTAGTGAAAGGCGTTCAGTTTTTGCATACCGGGATAGTGCCGGGACTGTACTCAAATAATCTCAAGATAACTGATATTCTTTTGGATAACAATCTTAATGTGAAAATAAGCAGTTATAATCTGCCAATCTATGCTGAAAACAAAAGAATGGTCAACAATGGAACTTCTGTTGGAGTAAAAGGAAATCTCCAAGCAAGGATAAATGATGGAGACAAGAATGATGTGTTTGATATTGGAGTAATCTTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTGGGAATATTAAAAGATCTTTTACATGTAAGCATCAAAACCGACGATATAGCTAGAAGAAGTATTGTTGATCCATTTGTTCATAAGGAATGTTCAGATGAATCATTAATGAAAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGAACCAAATGAAAGACCTTCTGTGGAAGATATCCTTTGGAATTTGCAGTTTGCAGCACAAGTTCAGAATTCATGGAAAAGAGAAACAAGTGATCATAGAGACTCACCTAAATTATCCTCAAGAGACACATAA 2505 0.3437 MAKKLPHSQHLLLLILFLSTIHFSQQLQYSQSQTLLKLQQLLGYPSTLTTLSNTNDFCNIEPTPYLTLVCYEDNLTQLHVVGNKNEFTSLPQNFNSYTLFSTLSSLSSLKVLSLVSLGLWGPLPETIAQLSSLEILNITSNYFSGVIPFHLSYLNNLQSLVLDDNNFNGEIPNLGSLQGLVVLSMKKNFLSGNLPNSLNNLVTLRVLDLSNNQLFGELPHLHNLVNLQVLHLENNTLGPHFPSLPTKLISLVIRNNSFRLGVPSNISSFYQLQKLDLSLNGFVGPFPASLLSLPSINYLDVSSNKFTGMLFKNFSCNDDLKFVNLSSNYLKGELPSCLRPKKTKVVLYAGNCLSNVKQDQHSYNFCSSEALAVNITPHQEQKHKGTANRTVLVSSSLGVIGVIIVALVIFVVNEVHKKNVMKKTSMSTLEDVIQNEEKEKTTARSIVENIIKKVPDKQAVKTLTKSIKEQIVSRVGNRRHVRRPSRSIIEHVSSVNTAKLLTDARCISETMKMGTGLPAYRTFALDQLKEATNNFDESSLISEGPLGQIYKGVLSDGMNITIRGMKIRKKHSPQAYMHHVELISKLRHSHLVSSLGHSFECNQEDSSVNTIFLIFEFVQDKSLRSRVSGSNGEKLGWTQRIAATIGVVKGVQFLHTGIVPGLYSNNLKITDILLDNNLNVKISSYNLPIYAENKRMVNNGTSVGVKGNLQARINDGDKNDVFDIGVILLEIILGRPIMFHNEVGILKDLLHVSIKTDDIARRSIVDPFVHKECSDESLMKMMEICVRCLSSEPNERPSVEDILWNLQFAAQVQNSWKRETSDHRDSPKLSSRDT 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01659 834 Gene3D Phosphorylase Kinase; domain 1 496 617 - -
Trre16g01659 834 SMART serkin_6 535 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01659 834 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Trre16g01659 834 SUPERFAMILY Protein kinase-like (PK-like) 515 808 IPR011009 -
Trre16g01659 834 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 107 825 - -
Trre16g01659 834 ProSiteProfiles Protein kinase domain profile. 535 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01659 834 Pfam Protein kinase domain 537 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01659 834 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 618 822 - -
Trre16g01659 834 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 509 617 - -
Trre16g01659 834 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Trre16g01659 834 SUPERFAMILY L domain-like 40 362 - -
Trre16g01659 834 FunFam Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 246 371 - -
Trre16g01659 834 Gene3D Transferase(Phosphotransferase) domain 1 619 830 - -
Trre16g01659 834 Gene3D Ribonuclease Inhibitor 28 241 IPR032675 -
Trre16g01659 834 Gene3D Ribonuclease Inhibitor 242 366 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01659 Trre-Chr16 13259838 13264164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01659 44 816 Miscellaneous Gene Families AT3G03770 49.872 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trre16g01659 Pkinase 1.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01659 - - lja:Lj0g3v0004239.1 1176