Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01657 ATGGAAACAAAAAACCCATCTGGGAATTCTTCAAAGTTTGAAACTTTCACGAATAATTCATCATCAAGAAGAAGTTTTGGTAGGAATTCAACAAGAGAAGTGACTTTTGGTCACTCTGAGTCAAAACCTTCTGTGAGGTATGGTTCAAAGGGTGCTGATTCTGAAGCTTTTAGTATGTCTCAGAAAGAAATTAGTGATGAAGATGCTAGGTTGATTTATGTTGATGATCCTGTTAAGACAAATGAGAGGTTTGAATTTGCAGGGAATTCGGTTCGAACCGGAAAGTACTCTTTTATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATTCTTAATCAGTTACCTCAACTAGCTGTTTTCGGAAGAGGTGTTTCGATTTTACCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAGGATTGGAGAAGACATAGGTCTGATAAAGTTGAGAACAATAGGTTAGGATTGGTTTTGGTTAATGGTCAATTTATTGAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATCATTAAAATCAATGCAAATGAACCGATTCCTTGTGATTTTGTTTTGTTGTCAACTAGTGACCCTACCGGTGTTGCTTATGTTCAGACACTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGATATGCGAAACAAGAGACTCAATTCAAGTTTCATGAAAAGGAGAGGTTTAATGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTCAGGCTACTATGGAGGTTGATGGAAAGAGGCTGTCCCTTGGTTCTTCAAATATTGTACTTAGAGGGTGTGAACTTAAGAATACTAATTGTGTGGTTGGTGTTGCGGTGTATTGTGGTCGTGAGACTAAAGCTATGCTCAACAACTCAGGAGCTCCGTCTAAGAGGAGTCGTCTCGAGACTCAAATGAACTCTGAGATCATCATGCTTTCTTTTTTCCTTGTAGCTTTGTGTATGGTCACTTCAGTTTGTGCGGCTGTTTGGTTAAAGCGAAACAAGAATGATTTGAATCTATTGCCTTATTATAGGAAATTGGATGTTTCAAAGGGAAAAGAGGAAAGTTATCAATATTATGGATGGGGAGCGGAAATGCTTTTCACGTTCCTCATGTCGGTTATAGTGTACCAGGTTATGATACCGATATCACTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCTTACTTCATGATCAAAGATTCCAGATTGTACGATGAGGCAACAAATTCAAGATTTCAGTGTAGGGCCTTGAATATCAATGAAGATTTAGGGCAAATTAAATATGTCTTTTCAGACAAAACTGGTACACTGACCGAGAACAAGATGGAGTTTCAATGCGCAAGTATTTGGGGTGTTGATTACAGTTCCGCAAAAGCCAACCTTGAGAATGAGCAAGTTGAATACTCTCTTCAAGTGGAAGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCAAGAGCTTTTGAGATTAACAAAAAGTGGATTTGCAAACAAAGATGGAAAACGGATTTATGATTTCTTTCTTGCATTGGCAGCATGCAATACTATTGTGCCTCTTGTTATTGACACATCTGATCCTACAGTCAAGCTAATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGACATATGCTGCCGCTGCCTATGGTTTTATGCTTATTGAACGAACCTCAGGTCACATAGTCATCGATATTCATGGAGAAAGACAAAGGTTCAATGTCTTGGGTTTACATGAATTTGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAGCGACAATTCGGTTAAACTTTTTGTCAAAGGGGCAGATACATCCATGTTCAGTGTGATTAATAAATCATTGAATACAGACATAATACAAGCAACAGAAACCCATCTTCACTCTTATTCATCCGTCGGTTTGAGGACGCTTGTTATTGGGATGCGGGACTTGAATGCTGCAGAATTTGATCAATGGCACTTTGCCTTTGAGGCAGCAAGTACTTCTATGATCGGTAGGGCTGCTTTGCTTCGCAAAGTTGCTGCCAATGTAGAGAACAATGTTTGCATATTGGGCGCTACTGCTATTGAAGATAAATTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTATTGACTGGTGACAAACAGGAAACTGCCATATCAATTGGCTACTCGTCAAGGCTACTAACAAGCGGCATGACTCAATTTAGAATTAAGAGCAATAATAGAGAGTCGTGTCGAAGACGTTTACAAGATGCACTTCTCATGTCTAGGAAAAATATTGCTGCACCTGAGGTTGGCAACTATTTTGAAGGAAGTTCCGACGGTGTTGTTTCAACTCCGATGGCTTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGACAATGAACTTGAAGAAGAGCTCTTTGAACTTGCACGAAGATGTTCCGTTGTTCTTTGTTGTCGAGTGGCTCCGTTGCAAAAGGCTGGGATTGTCTCTCTTGTGAAGAAAAGGACGGCTGACATGACTCTAGCCATTGGAGATGGTGCCAATGATGTATCAATGATCCAAATGGCTGATGTTGGGGTCGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGACAGTTTAGGTTTTTAGTACCTCTCTTATTTATACACGGACACTGGAATTACCAACGACTAGGCTACATGGTCCTATACAATTTTTACAGAAATGCCGTCTTTGTCTTAATTCTATTTTGGTATGTGCTCTTCACTGCCTTTACTTTGACAACTGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCAGTGCCAACTATTGTTGTTGGTATTCTTGACAAGGATCTTAGTAAAAGGACTCTCCTCGATAATCCTCAACTTTATGGGGCTGGACAAAGACAGGAGGCCTACAACAAAAAATTGTTTTGGTTGACAATGGCCGATACGTTATGGCAAAGCATTGTTGTCTTCTTTGCTCCTCTCTTTGCATATTGGGGAAGCACCGTAGATATAGCAAGCATAGGGGATCTTTGGACCCTTTCGGTAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGACTTGGATTACTCATGCATCCATTTGGGGTTCTATCATTTCAACTTTCATATGTGTCATGATTATTGATGCATTACCATCACTCCGTGGTTACTGGGCTATCTTTGATGCTGCAGGCACGGCATTGTTCTGGTTATGTTTGCTTGGAATACTAATAGCAGCATTACTTCCACGATTTGTTGTAAAATTTGTATATCAATATTATTCACCCGATGATATTCAGATTTCAAGAGAAGTTGAGAAAGCTAGGAATCTAAGGATCAATGGAGATGCACAGATAGAAATGTTTCACATCTCAAATCCACAAAGATAA 3531 0.3922 METKNPSGNSSKFETFTNNSSSRRSFGRNSTREVTFGHSESKPSVRYGSKGADSEAFSMSQKEISDEDARLIYVDDPVKTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGQFIEKKWKDIRVGEIIKINANEPIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFNGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVALCMVTSVCAAVWLKRNKNDLNLLPYYRKLDVSKGKEESYQYYGWGAEMLFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKANLENEQVEYSLQVEGKVLKPKMKVKVNQELLRLTKSGFANKDGKRIYDFFLALAACNTIVPLVIDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGYSDNSVKLFVKGADTSMFSVINKSLNTDIIQATETHLHSYSSVGLRTLVIGMRDLNAAEFDQWHFAFEAASTSMIGRAALLRKVAANVENNVCILGATAIEDKLQQGVPESIESLRKAGIKVWVLTGDKQETAISIGYSSRLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNIAAPEVGNYFEGSSDGVVSTPMALIIDGTSLVYILDNELEEELFELARRCSVVLCCRVAPLQKAGIVSLVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFIHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVGILDKDLSKRTLLDNPQLYGAGQRQEAYNKKLFWLTMADTLWQSIVVFFAPLFAYWGSTVDIASIGDLWTLSVVILVNLHLAMDVIRWTWITHASIWGSIISTFICVMIIDALPSLRGYWAIFDAAGTALFWLCLLGILIAALLPRFVVKFVYQYYSPDDIQISREVEKARNLRINGDAQIEMFHISNPQR 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01657 1176 CDD P-type_ATPase_APLT_Dnf-like 88 1036 - -
Trre16g01657 1176 SFLD Haloacid Dehalogenase 440 927 - -
Trre16g01657 1176 MobiDBLite consensus disorder prediction 1 54 - -
Trre16g01657 1176 NCBIfam HAD-IC family P-type ATPase 847 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01657 1176 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 462 728 IPR023299 GO:0000166
Trre16g01657 1176 PRINTS P-type cation-transporting ATPase superfamily signature 863 875 - -
Trre16g01657 1176 PRINTS P-type cation-transporting ATPase superfamily signature 739 749 - -
Trre16g01657 1176 PRINTS P-type cation-transporting ATPase superfamily signature 456 470 - -
Trre16g01657 1176 FunFam Phospholipid-transporting ATPase 560 693 - -
Trre16g01657 1176 Pfam Cation transport ATPase (P-type) 564 639 - -
Trre16g01657 1176 SUPERFAMILY Calcium ATPase, transmembrane domain M 87 1143 IPR023298 -
Trre16g01657 1176 Pfam Phospholipid-translocating ATPase N-terminal 72 137 IPR032631 -
Trre16g01657 1176 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 63 1154 - -
Trre16g01657 1176 Gene3D - 712 916 IPR023214 -
Trre16g01657 1176 SUPERFAMILY Calcium ATPase, transduction domain A 171 310 IPR008250 -
Trre16g01657 1176 Pfam E1-E2 ATPase 174 413 - -
Trre16g01657 1176 MobiDBLite consensus disorder prediction 1 38 - -
Trre16g01657 1176 Gene3D - 146 313 - -
Trre16g01657 1176 FunFam Phospholipid-transporting ATPase 712 916 - -
Trre16g01657 1176 SUPERFAMILY HAD-like 443 917 IPR036412 -
Trre16g01657 1176 Gene3D - 557 691 IPR023299 GO:0000166
Trre16g01657 1176 FunFam Phospholipid-transporting ATPase 144 313 - -
Trre16g01657 1176 NCBIfam phospholipid-translocating P-type ATPase 86 1151 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre16g01657 1176 SFLD p-type atpase 440 927 IPR044492 -
Trre16g01657 1176 ProSitePatterns E1-E2 ATPases phosphorylation site. 458 464 IPR018303 -
Trre16g01657 1176 Pfam Phospholipid-translocating P-type ATPase C-terminal 904 1143 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01657 Trre-Chr16 13237919 13243206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01657 21 1176 Primary Pumps ATPases AT5G04930 69.576 0.0 1696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01657 K14802 - gmx:100784988 1914.43