Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01656 ATGATGGAAACAAAAAACCCATCTGGGAATTCTTCAAAGTTTGAAACTTTCACGAATAATTCATCATCAAGAAGAAGTTTTGGTAGGAATTCAACAAGAGAAGTGACTTTTGGTCACTCTGAGTCAAAACCTTCTGTGAGGTATGGTTCAAAGGGTGCTGATTCTGAAGCTTTTAGTATGTCTCAGAAAGAAATTAGTGATGAAGATGCTAGGTTGATTTATGTTGATGATCCTGTTAAGACAAATGAGAGGTTTGAATTTGCAGGGAATTCGGTTCGAACCGGAAAGTACTCTTTTATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATTCTTAATCAGTTACCTCAACTAGCTGTTTTCGGAAGAGGTGTTTCGATTTTACCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAGGATTGGAGAAGACATAGGTCTGATAAAGTTGAGAACAATAGGTTAGGATTGGTTTTGGTTAATGGTCAATTTATTGAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATCATTAAAATCAATGCAAATGAACCGATTCCTTGTGATTTTGTTTTGTTGTCAACTAGTGACCCTACCGGTGTTGCTTATGTTCAGACACTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGATATGCGAAACAAGAGACTCAATTCAAGTTTCATGAAAAGGAGAGGTTTAATGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTCAGGCTACTATGGAGGTTGATGGAAAGAGGCTGTCCCTTGGTTCTTCAAATATTGTACTTAGAGGGTGTGAACTTAAGAATACTAATTGTGTGGTTGGTGTTGCGGTGTATTGTGGTCGTGAGACTAAAGCTATGCTCAACAACTCAGGAGCTCCGTCTAAGAGGAGTCGTCTCGAGACTCAAATGAACTCTGAGATCATCATGCTTTCTTTTTTCCTTGTAGCTTTGTGTATGGTCACTTCAGTTTGTGCGGCTGTTTGGTTAAAGCGAAACAAGAATGATTTGAATCTATTGCCTTATTATAGGAAATTGGATGTTTCAAAGGGAAAAGAGGAAAGTTATCAATATTATGGATGGGGAGCGGAAATGCTTTTCACGTTCCTCATGTCGGTTATAGTGTACCAGGTTATGATACCGATATCACTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCTTACTTCATGATCAAAGATTCCAGATTGTACGATGAGGCAACAAATTCAAGATTTCAGTGTAGGGCCTTGAATATCAATGAAGATTTAGGGCAAATTAAATATGTCTTTTCAGACAAAACTGGTACACTGACCGAGAACAAGATGGAGTTTCAATGCGCAAGTATTTGGGGTGTTGATTACAGTTCCGCAAAAGCCAACCTTGAGAATGAGCAAGTTGAATACTCTCTTCAAGTGGAAGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCAAGAGCTTTTGAGATTAACAAAAAGTGGATTTGCAAACAAAGATGGAAAACGGATTTATGATTTCTTTCTTGCATTGGCAGCATGCAATACTATTGTGCCTCTTGTTATTGACACATCTGATCCTACAGTCAAGCTAATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGACATATGCTGCCGCTGCCTATGGTTTTATGCTTATTGAACGAACCTCAGGTCACATAGTCATCGATATTCATGGAGAAAGACAAAGGTTCAATGTCTTGGGTTTACATGAATTTGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAGCGACAATTCGGTTAAACTTTTTGTCAAAGGGGCAGATACATCCATGTTCAGTGTGATTAATAAATCATTGAATACAGACATAATACAAGCAACAGAAACCCATCTTCACTCTTATTCATCCGTCGGTTTGAGGACGCTTGTTATTGGGATGCGGGACTTGAATGCTGCAGAATTTGATCAATGGCACTTTGCCTTTGAGGCAGCAAGTACTTCTATGATCGGTAGGGCTGCTTTGCTTCGCAAAGTTGCTGCCAATGTAGAGAACAATGTTTGCATATTGGGCGCTACTGCTATTGAAGATAAATTGCAGCAAGGTGTGCCAGAATCTATTGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTATTGACTGGTGACAAACAGGAAACTGCCATATCAATTGGCTACTCGTCAAGGCTACTAACAAGCGGCATGACTCAATTTAGAATTAAGAGCAATAATAGAGAGTCGTGTCGAAGACGTTTACAAGATGCACTTCTCATGTCTAGGAAAAATATTGCTGCACCTGAGGTTGGCAACTATTTTGAAGGAAGTTCCGACGGTGTTGTTTCAACTCCGATGGCTTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGACAATGAACTTGAAGAAGAGCTCTTTGAACTTGCACGAAGATGTTCCGTTGTTCTTTGTTGTCGAGTGGCTCCGTTGCAAAAGGCTGGGATTGTCTCTCTTGTGAAGAAAAGGACGGCTGACATGACTCTAGCCATTGGAGATGGTGCCAATGATGTATCAATGATCCAAATGGCTGATGTTGGGGTCGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGACAGTTTAGGTTTTTAGTACCTCTCTTATTTATACACGGACACTGGAATTACCAACGACTAGGCTACATGGTCCTATACAATTTTTACAGAAATGCCGTCTTTGTCTTAATTCTATTTTGGTATGTGCTCTTCACTGCCTTTACTTTGACAACTGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCAGTGCCAACTATTGTTGTTGGTATTCTTGACAAGGATCTTAGTAAAAGGACTCTCCTCGATAATCCTCAACTTTATGGGGCTGGACAAAGACAGGAGGCCTACAACAAAAAATTGTTTTGGTTGACAATGGCCGATACGTTATGGCAAAGCATTGTTGTCTTCTTTGCTCCTCTCTTTGCATATTGGGGAAGCACCGTAGATATAGCAAGCATAGGGGATCTTTGGACCCTTTCGGTAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGACTTGGATTACTCATGCATCCATTTGGGGTTCTATCATTTCAACTTTCATATGTGTCATGATTATTGATGCATTACCATCACTCCGTGGTTACTGGGCTATCTTTGATGCTGCAGGCACGGCATTGTTCTGGTTATGTTTGCTTGGAATACTAATAGCAGCATTACTTCCACGATTTGTTGTAAAATTTGTATATCAATATTATTCACCCGATGATATTCAGATTTCAAGAGAAGTTGAGAAAGCTAGGAATCTAAGGATCAATGGAGATGCACAGATAGAAATGTTTCACATCTCAAATCCACAAAGATAA 3534 0.3922 MMETKNPSGNSSKFETFTNNSSSRRSFGRNSTREVTFGHSESKPSVRYGSKGADSEAFSMSQKEISDEDARLIYVDDPVKTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGQFIEKKWKDIRVGEIIKINANEPIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFNGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVALCMVTSVCAAVWLKRNKNDLNLLPYYRKLDVSKGKEESYQYYGWGAEMLFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKANLENEQVEYSLQVEGKVLKPKMKVKVNQELLRLTKSGFANKDGKRIYDFFLALAACNTIVPLVIDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGYSDNSVKLFVKGADTSMFSVINKSLNTDIIQATETHLHSYSSVGLRTLVIGMRDLNAAEFDQWHFAFEAASTSMIGRAALLRKVAANVENNVCILGATAIEDKLQQGVPESIESLRKAGIKVWVLTGDKQETAISIGYSSRLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNIAAPEVGNYFEGSSDGVVSTPMALIIDGTSLVYILDNELEEELFELARRCSVVLCCRVAPLQKAGIVSLVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFIHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVGILDKDLSKRTLLDNPQLYGAGQRQEAYNKKLFWLTMADTLWQSIVVFFAPLFAYWGSTVDIASIGDLWTLSVVILVNLHLAMDVIRWTWITHASIWGSIISTFICVMIIDALPSLRGYWAIFDAAGTALFWLCLLGILIAALLPRFVVKFVYQYYSPDDIQISREVEKARNLRINGDAQIEMFHISNPQR 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01656 1177 Pfam E1-E2 ATPase 175 414 - -
Trre16g01656 1177 NCBIfam phospholipid-translocating P-type ATPase 87 1152 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre16g01656 1177 SUPERFAMILY Calcium ATPase, transduction domain A 172 311 IPR008250 -
Trre16g01656 1177 NCBIfam HAD-IC family P-type ATPase 848 963 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01656 1177 Gene3D - 558 692 IPR023299 GO:0000166
Trre16g01656 1177 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Trre16g01656 1177 PRINTS P-type cation-transporting ATPase superfamily signature 864 876 - -
Trre16g01656 1177 PRINTS P-type cation-transporting ATPase superfamily signature 740 750 - -
Trre16g01656 1177 Pfam Phospholipid-translocating ATPase N-terminal 73 138 IPR032631 -
Trre16g01656 1177 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g01656 1177 SUPERFAMILY Calcium ATPase, transmembrane domain M 88 1144 IPR023298 -
Trre16g01656 1177 Gene3D - 713 917 IPR023214 -
Trre16g01656 1177 SFLD C1.7: P-type atpase like 441 928 - -
Trre16g01656 1177 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 64 1155 - -
Trre16g01656 1177 SFLD p-type atpase 441 928 IPR044492 -
Trre16g01656 1177 Pfam Cation transport ATPase (P-type) 565 640 - -
Trre16g01656 1177 Gene3D - 147 314 - -
Trre16g01656 1177 FunFam Phospholipid-transporting ATPase 145 314 - -
Trre16g01656 1177 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 463 729 IPR023299 GO:0000166
Trre16g01656 1177 CDD P-type_ATPase_APLT_Dnf-like 89 1037 - -
Trre16g01656 1177 Pfam Phospholipid-translocating P-type ATPase C-terminal 905 1144 IPR032630 -
Trre16g01656 1177 SUPERFAMILY HAD-like 444 918 IPR036412 -
Trre16g01656 1177 MobiDBLite consensus disorder prediction 1 55 - -
Trre16g01656 1177 FunFam Phospholipid-transporting ATPase 713 917 - -
Trre16g01656 1177 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Trre16g01656 1177 FunFam Phospholipid-transporting ATPase 561 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01656 Trre-Chr16 13237916 13243206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01656 22 1177 Primary Pumps ATPases AT5G04930 69.576 0.0 1697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01656 K14802 - gmx:100784988 1914.43