Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01644 ATGTCTTCTTCGTCAAGTGGTGGAGCATTCAGGCTTCGTTGGGATGTATTTTTAAGTTTCAGAGGAGAAAATACACGCAAATGTTTCACAAAAAAACTGTACGAATCTCTTCATCGTGAAGGAATTCGTGCTTTCATGGACGACGAGGGTTTAGATCGTGGTGACAACATACAAACAAGTTTACTTCAAGCCATTGATGACTCTGCTGCTTCCATTGTTATAATTTCTGAAAACTATGCTGATTCTCATTGGTGTCTCGATGAACTCGCCAGGATTTGTGATTCAGGGAGGCTTGTTATTCCTGTTTTCTATAAGGTTGATCCTTCTCATGTTAGGAAACAATTGGATCCTTTTAAAAAAGGTTTTGATGATCTTGAAATAAGGTTTCAAGATCAGAAAGATAAGGTTCAGAAGTGGAGAGATTCTATGCTTAAAGTTGGTGGATTTGCTGGTTTTGTTGTCAAAGATAATAGTGATGATGTCGAGCATGAGAATCTGATACGCCGATTGGTACAGAGGGTTTTGAAGGAGTTAAGTAATACTCCAATGGTTGTGTCTGAGTTTGCAGTGGGGCTCAACAAACGTGTTGACAAGGTGATGGATTTATTACAAGTTCGATCCAACGGTGTTAAGGTCTTGGGGTTGTATGGGATGGGTGGTGTTGGTAAGACAACTCTAGCAAAGGCTCTTTTCAATAGTCTTGTTGGTCGTTTCGAGCGTAGATGCTTTGTTTCCAATGTGAGACAATTTTCATCTAAAGAAGATGGTTTGGTTTCTCTTCAAAGCAATGTCATTAAAGATCTTTCTCCTGAAAATGCTCACAGTGTTATCGGTGATGTCAATGCTGGTATATCTGTTATCAAAAGAATAATTCATGAAAATCGAGTTCTGCTAGTGTTGGATGATGTTGATAATGTAAATCAGCTTGATGCTTTGATTGGTAAAAGAGAGAGGTTTTATGAAGGAAGCTGTATAATAATTACAACAAGGGATATAACTGTTTTGCCTGAAAAACATGTCAATAAGTTGTATGAAGTTACAGAATTGGATACTGAAGAAGCTCTAGAGTTATTCAGTTACCATGCACTAAGGAAAAAGGAACCTCCACAAAATCTTCTGGATTTTTCAAATAAAATTGTGTCTCTTACAGGAAGAATGCCATTGGCTTTGGAAGTGTTTGGTTGCTTTCTGTTTGGTAAGAGGAGGGTGCAGGAATGGGAGGATGCTGTTGAAAAGCTGAGAACAATTCGCCCCGGGAGTCTTCATGATGTGTTGAAGATAAGTTATGATGGATTGGATGAACAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTCTTTGTTCAAATGGGAACGAAGCGCGATGATGTGATTGATATATTGAGAGGTTGTGGTTTTAGTGGAGAGATAGCTATGACCAATCTTGTAGAGAAATGCTTAATCAAAATAAGACAGCATGACAATACCTTGTGGATGCATGATCAGATTAGAGATATGGGAAGACAGATTGTACTTAATGAAAACCATGTCGATCCTGGGATGCGTAGTAGATTGTGGGATCGTGCTGAAATCATGTCTGTTTTGAAGAGTAAGAAGGGAACAAGATGCGTACAAGGAATTGTACTAGACTTTAAGGCAGGTCCGAGTTATCCTCATCAACCTCAAGCAGACAAAGTTATACTTGATACAAAATCTTTTGAACCAATGGTTAGCTTGAGATTGCTTCAGATCAATAATTTGAGTTTGGAAGGCAAGTTTCTGCCAGATGAACTGAAGTGGCTACAATGGCGAGGTTGTCCTTTAGAAGGCATACCTTTGGATGCTTTGCCACGTGAACTGGCTGTCCTCGATCTCTCAAATGGCCAGAAAATTAAAAGCTTGCGGGGATTTGAAAGTCACAAGGTACCAGAGAACCTAATGGTTATAAACCTCTCCGACTGCTACAGACTTGCTGCAATCCCTGATTTATCTTGGTGTCTCAAGCTAGAGAAAATTAATTTGGAGAGCTGCATTAATCTAAAAAGGATTCATGAATCAATTGGAAGTTTAACTACCTTGCGTAATTTGAATTTGACTCGTTGTGAAAAGCTTATTGAACTTCCTAGTGATATCTCTGGACTGAAACATTTGGAGAGCCTCTTTCTTTCCAAGTGCTCCATGTTGAAAGCATTACCAGAAAACATAGGTATTCTTAAATCTCTGAAAACACTTTTTGCCGATGAAACTGATATAGTAAAGTTGCCAGAGTCCATTTTCCGCCTGACAAAACTCGAACGACTTGCTTTAAATAGTTGCAAATATTTGACAAGACTACCAAACTGCATTGGAAAACTATGTTCATTGCAAGAATTATCTCTTGCTCACTCAGGTTTACAAGAATTACCCAACACTGTCGGGTCCTTGAAAAATCTTGAGAAATTAAGTTTGATTGGGTGTAAATCTCTCACTCAAATGCCTGATTCCATAGGAAATCTTGAATCGTTAACAGAACTTTTGGCTTACAACAGTGGAATTAAAGAACTTCCTTCCACCATTGGTTCTTTATCCTATCTGAGGACGTTATCAGTCGGAGAGTGTAAACTTCTCAGTATATTGCCTGACTCATTTAGATCTCTGGCATCAATTACTGAACTTCAGTTAGATGGAACATCTATCAGATATCTTCCAGATGAAATTGGAGAAATGAAACAACTGAGGAAACTTGAGATTGGGAATTGTAGTAATCTAGACTCATTACCAGAATCCATTGGCCACCTAGCATCTCTTACTACACTGAACATAGTCAATGGAAATATAAGAGAATTGCCAGCATCGATTGGATTACTAGACAATCTTGTTACCTTAACATTGAACCAATGTAGAATGCTTAAACAGCTTCCGGAATCTATAGGAAACCTGAAATCTCTATGTCACTTAATGATGGAGGGAACATCTATGTCATACTTGCCTGAAAGTTTTGGTATGCTCTCAGGCCTGAGATCACTGAGAATGGCAAACAAGCCTGATTTAGTTCCCAAATCTGTGGAGAACACCGGCTCTTTTGTGCTACCGTCTTCTTTCTGTAATCTGACCTTGCTATATGAGTTCAATGCCTGTGCTTGGAGATTATCTGGGAAAATTCCGGACGATTTCGAGAAGCTGTCATTATTAGAGACTTTAAATTTGAGCCACAACAATTTTCATAGCCTTCCTTCCAGCTTGAAAGGTCTTTCCATTCTTAAGATATTCAAGCTTCAGAATTGCACGGAGCTGATATCTCTCCCCTCACTTCCTTCAAGTTTGATCGAGCTAAACGCTGATAATTGCTACGCGTTAGAAACTATACACGACATGTCAAATTTAGAGAGTTTGGAGGAGTTGAAACTCACTAATTGTGAGAAAGTGGTGGATATTCCAGGTCTTGAATGCTTAAAGTCGTTGAAAAGATTGTACCTAAGTGGTTGCAGTGCATGCCCTTCCAAAGTATGCAAAAGACTTTCAAAGGTTGCACTGAGAAATTTTCAGAACTTGAGCTTGCCAGGAACAAAGTTACCTGAATGGTTTTCAGGAAAAACTGTAAGCTTTTCCAAGCACAAAAATCTCGAGCTAACAAGTGTAGTAGTTGGTGTTATTTTTTCAATTAACCGAAACAATATGGAAAATCAAATTCCTGAGGTGGTTGATGTTCAAGCAAAGGTTCTCAAACTAGGCAATCCTATTTTTAGTTCAGTGCTATACATAGGTGGAGTGCCAAGGACAGATGAAAAACAGATACACTTGCGAAGGTTTAAATATTACCATCCATTGGTAAACCTTTTAAAGGATGCTGATACAGTTTGTGTGACAAAGAGAAACCCTCCTTTTGATGAGAGGCTGGAGTTGAAAAAATGTGGAATTCATTTAATCTTTGAAGGGGATGATGATTATGAGGGAGACGAAGAGTCGTTGGACAAAGGCCAACAATCTGTCTCAGAAAGGTTGGCCAGGTTTTTTAACACTTGTGATGAAGGTGTTGATGACACTGAGAGTGAAGATGATCAGTGTCAACATGAATTGGAGCAGGAAAAAGAAGAGCCTGAAACTAGATTACTTGGTTTTAAAGGAAGTTCCATTCTATCCTTCCTGCTTAGTCTATTCTTTGTGCTGTTGGGTTTGTTTTGGTTTAGGTGTATGTCTAGTCCTGTGAAATGA 4170 0.3873 MSSSSSGGAFRLRWDVFLSFRGENTRKCFTKKLYESLHREGIRAFMDDEGLDRGDNIQTSLLQAIDDSAASIVIISENYADSHWCLDELARICDSGRLVIPVFYKVDPSHVRKQLDPFKKGFDDLEIRFQDQKDKVQKWRDSMLKVGGFAGFVVKDNSDDVEHENLIRRLVQRVLKELSNTPMVVSEFAVGLNKRVDKVMDLLQVRSNGVKVLGLYGMGGVGKTTLAKALFNSLVGRFERRCFVSNVRQFSSKEDGLVSLQSNVIKDLSPENAHSVIGDVNAGISVIKRIIHENRVLLVLDDVDNVNQLDALIGKRERFYEGSCIIITTRDITVLPEKHVNKLYEVTELDTEEALELFSYHALRKKEPPQNLLDFSNKIVSLTGRMPLALEVFGCFLFGKRRVQEWEDAVEKLRTIRPGSLHDVLKISYDGLDEQEKCIFLDIACFFVQMGTKRDDVIDILRGCGFSGEIAMTNLVEKCLIKIRQHDNTLWMHDQIRDMGRQIVLNENHVDPGMRSRLWDRAEIMSVLKSKKGTRCVQGIVLDFKAGPSYPHQPQADKVILDTKSFEPMVSLRLLQINNLSLEGKFLPDELKWLQWRGCPLEGIPLDALPRELAVLDLSNGQKIKSLRGFESHKVPENLMVINLSDCYRLAAIPDLSWCLKLEKINLESCINLKRIHESIGSLTTLRNLNLTRCEKLIELPSDISGLKHLESLFLSKCSMLKALPENIGILKSLKTLFADETDIVKLPESIFRLTKLERLALNSCKYLTRLPNCIGKLCSLQELSLAHSGLQELPNTVGSLKNLEKLSLIGCKSLTQMPDSIGNLESLTELLAYNSGIKELPSTIGSLSYLRTLSVGECKLLSILPDSFRSLASITELQLDGTSIRYLPDEIGEMKQLRKLEIGNCSNLDSLPESIGHLASLTTLNIVNGNIRELPASIGLLDNLVTLTLNQCRMLKQLPESIGNLKSLCHLMMEGTSMSYLPESFGMLSGLRSLRMANKPDLVPKSVENTGSFVLPSSFCNLTLLYEFNACAWRLSGKIPDDFEKLSLLETLNLSHNNFHSLPSSLKGLSILKIFKLQNCTELISLPSLPSSLIELNADNCYALETIHDMSNLESLEELKLTNCEKVVDIPGLECLKSLKRLYLSGCSACPSKVCKRLSKVALRNFQNLSLPGTKLPEWFSGKTVSFSKHKNLELTSVVVGVIFSINRNNMENQIPEVVDVQAKVLKLGNPIFSSVLYIGGVPRTDEKQIHLRRFKYYHPLVNLLKDADTVCVTKRNPPFDERLELKKCGIHLIFEGDDDYEGDEESLDKGQQSVSERLARFFNTCDEGVDDTESEDDQCQHELEQEKEEPETRLLGFKGSSILSFLLSLFFVLLGLFWFRCMSSPVK 1389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01644 1389 Gene3D Ribonuclease Inhibitor 670 831 IPR032675 -
Trre16g01644 1389 ProSiteProfiles Leucine-rich repeat profile. 1049 1071 IPR001611 GO:0005515
Trre16g01644 1389 Pfam TIR domain 14 182 IPR000157 GO:0007165
Trre16g01644 1389 Gene3D Ribonuclease Inhibitor 557 669 IPR032675 -
Trre16g01644 1389 Gene3D Ribonuclease Inhibitor 832 1008 IPR032675 -
Trre16g01644 1389 Gene3D Ribonuclease Inhibitor 1009 1223 IPR032675 -
Trre16g01644 1389 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 773 IPR044974 GO:0006952
Trre16g01644 1389 SMART LRR_CC_2 801 834 IPR006553 -
Trre16g01644 1389 SMART LRR_CC_2 895 922 IPR006553 -
Trre16g01644 1389 SMART LRR_CC_2 1114 1140 IPR006553 -
Trre16g01644 1389 SMART LRR_CC_2 659 686 IPR006553 -
Trre16g01644 1389 SMART LRR_CC_2 848 875 IPR006553 -
Trre16g01644 1389 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Trre16g01644 1389 SUPERFAMILY L domain-like 862 1179 - -
Trre16g01644 1389 Gene3D - 348 433 IPR042197 -
Trre16g01644 1389 SUPERFAMILY L domain-like 491 906 - -
Trre16g01644 1389 SMART LRR_typ_2 731 754 IPR003591 -
Trre16g01644 1389 SMART LRR_typ_2 919 942 IPR003591 -
Trre16g01644 1389 SMART LRR_typ_2 778 801 IPR003591 -
Trre16g01644 1389 SMART LRR_typ_2 1047 1069 IPR003591 -
Trre16g01644 1389 SMART LRR_typ_2 825 848 IPR003591 -
Trre16g01644 1389 SMART LRR_typ_2 872 895 IPR003591 -
Trre16g01644 1389 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 443 IPR027417 -
Trre16g01644 1389 PRINTS Disease resistance protein signature 383 397 - -
Trre16g01644 1389 PRINTS Disease resistance protein signature 893 909 - -
Trre16g01644 1389 PRINTS Disease resistance protein signature 212 227 - -
Trre16g01644 1389 PRINTS Disease resistance protein signature 290 304 - -
Trre16g01644 1389 Gene3D - 11 175 IPR035897 -
Trre16g01644 1389 Pfam NB-ARC domain 194 419 IPR002182 GO:0043531
Trre16g01644 1389 ProSiteProfiles TIR domain profile. 12 175 IPR000157 GO:0007165
Trre16g01644 1389 SMART till_3 13 149 IPR000157 GO:0007165
Trre16g01644 1389 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 180 - -
Trre16g01644 1389 Gene3D - 176 343 IPR027417 -
Trre16g01644 1389 Coils Coil 1331 1351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01644 Trre-Chr16 13137299 13144366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01644 781 995 WRKY Transcription Factor Family AT4G12020 29.954 1.93e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01644 - - mtr:11408681 2118.97