Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01643 ATGAAAAAGTCTCCACCATCTTCAAGTTCATCATCTTCATCTTCAATTGGATTTGAGAATCCAATTCAATCAGAGAAAAAAAGAGTTGCTAAGAATCCAAAAAAGAATCTCAATCTCAAGTCACAAAATTTCAAGCAGAAGAAGAACCAAACAAATGGTGGCAGCAGAAGAAGCTCCATTTATAGAGGAGTAACAAGACATAGGTGGACTGGGAGATTTGAAGCTCATCTTTGGGATAAGAGTTCTTGGAACAACATTCAGAGCAAAAAGGGAAAACAAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTTAAGTATTGGGGAAAAGATGCAACCTTGAATTTCCCGATAGAAACTTATGCAAAAGAGTTTGAAGAAATGGACAAGTCCTCAAAAGAAGAGTATTTGGCTTCTTTGCGGCGGCAAAGCAGTGGCTTTTCTAGAGGAATTTCTAAGTACCGTGGAGTTGCCAGGCATCACCATAATGGTCGCTGGGAAGCTCGCATTGGAAGAGTTTGTGGTAACAAATACCTCTATTTGGGCACATACAAAACTCAAGAAGAGGCAGCAGTGGCATATGATATGGCAGCAATAGAGTACAGAGGAATGAATGCAGTGACAAATTTTGACATTAGCAACTACATAGACAAAGCGAAGAATAAGAAAAATGATGAAACAGAACAAACAGAACCACAACAAACAATAACAGAAATTGTTCCTAATAATTCATCTGATTCTGAAGAATTTTCAGAAGAACAAACAACACCGCCACCACCACCACCACAAGAAATTCTACAAGAAATGGAACCACATCATCAACAAGTTCAACAACAACATGTTCCTCCAATTGTTCATGAGGAAGTTAATGTTATGGATCATTACTTTGACCAAGATTGGAGCTGCATGTATTATGGTTTGTCAGAGTTACAAGACACAAACATGGATTTCAACAAAGGTGGCGAAGATTTAATCGACATATTTGATGGCTCGGGTTTCGTGGAAGACATTGGTTTAATGTTCAACACAGAAGAACCTTATGGTGGTGTTGAAAGTGATATCAATATCAGTGAAGTTTTGAAGGGTATTGAATGTGGAGGATTATTAAATAATGGAGATGATAACAACAAAGAGAAGGAACTATCATCTTTAGAATCTTCTTCACCATCATCTTCAACAACTACATTTTCTTTGTAA 1215 0.3778 MKKSPPSSSSSSSSSIGFENPIQSEKKRVAKNPKKNLNLKSQNFKQKKNQTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQSKKGKQGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYAKEFEEMDKSSKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGMNAVTNFDISNYIDKAKNKKNDETEQTEPQQTITEIVPNNSSDSEEFSEEQTTPPPPPPQEILQEMEPHHQQVQQQHVPPIVHEEVNVMDHYFDQDWSCMYYGLSELQDTNMDFNKGGEDLIDIFDGSGFVEDIGLMFNTEEPYGGVESDINISEVLKGIECGGLLNNGDDNNKEKELSSLESSSPSSSTTTFSL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01643 404 Gene3D AP2/ERF domain 158 219 IPR036955 GO:0003700|GO:0006355
Trre16g01643 404 Gene3D AP2/ERF domain 60 125 IPR036955 GO:0003700|GO:0006355
Trre16g01643 404 MobiDBLite consensus disorder prediction 380 404 - -
Trre16g01643 404 MobiDBLite consensus disorder prediction 1 59 - -
Trre16g01643 404 SMART rav1_2 159 223 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 SMART rav1_2 60 129 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 MobiDBLite consensus disorder prediction 236 259 - -
Trre16g01643 404 Pfam AP2 domain 60 115 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 Pfam AP2 domain 158 210 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 ProSiteProfiles AP2/ERF domain profile. 60 123 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 MobiDBLite consensus disorder prediction 35 59 - -
Trre16g01643 404 FunFam AP2-like ethylene-responsive transcription factor 59 125 - -
Trre16g01643 404 MobiDBLite consensus disorder prediction 388 404 - -
Trre16g01643 404 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g01643 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 277 - -
Trre16g01643 404 CDD AP2 158 219 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 MobiDBLite consensus disorder prediction 227 272 - -
Trre16g01643 404 SUPERFAMILY DNA-binding domain 59 125 IPR016177 GO:0003677
Trre16g01643 404 ProSiteProfiles AP2/ERF domain profile. 159 217 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 FunFam AP2-like ethylene-responsive transcription factor 158 219 - -
Trre16g01643 404 SUPERFAMILY DNA-binding domain 158 219 IPR016177 GO:0003677
Trre16g01643 404 CDD AP2 59 124 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre16g01643 404 PRINTS Ethylene responsive element binding protein signature 199 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01643 Trre-Chr16 13121672 13127279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01643 24 263 AP2-EREBP Transcription Factor Family AT5G57390 54.918 1.03e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g01643 AP2 1.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01643 - - cam:101488375 499.59