Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01641 ATGATTGAGAATCCTTCATCATTGCGTAGTAAAAGGCTTAAATCGCCATCACCGTCTTATAACATTCGTAAGAAGAGTAAAATCAACTCAAAAGAACAAAAAGAATCTAAGCATGAGAAGAGCAAAGTCCAAGCACAAGCAAGATTTCCTAAATTTAAGGATATGGACAATGCAGGATATAGTTGTAATGATCTTAAAGAGAGAAGCATAGTTTTGTACGAGAAAGTGAAGAAAAAATTTCACTCTGATAAGGACTTCTTCGCATGTATGATCCATAAGACATACGTTGAGAGAGATATGCTGGCTATACCAAATGAATTTGCTTATACACATCTACACAGAATGGAAGGAAGAAATGTTACACTTTTTGTTGACCAAGACAGAACATGGAATGTTGATTTAAAGCTCACAATAAATAAACAATTCAGACTTACTAGTGGTTGGAGTAAATTTCGTGCTGACAATAATTTGAAATTTGGTGATGTTTGTGTTTTTATGCTAAACAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAGGACATGAGTGCTCCATATTTTGAAGGGTTGTGA 588 0.3401 MIENPSSLRSKRLKSPSPSYNIRKKSKINSKEQKESKHEKSKVQAQARFPKFKDMDNAGYSCNDLKERSIVLYEKVKKKFHSDKDFFACMIHKTYVERDMLAIPNEFAYTHLHRMEGRNVTLFVDQDRTWNVDLKLTINKQFRLTSGWSKFRADNNLKFGDVCVFMLNKCKGTVSFQVVIFSLEKDMSAPYFEGL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01641 195 MobiDBLite consensus disorder prediction 25 46 - -
Trre16g01641 195 SUPERFAMILY DNA-binding pseudobarrel domain 81 182 IPR015300 -
Trre16g01641 195 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 187 IPR044837 -
Trre16g01641 195 CDD B3_DNA 86 182 IPR003340 GO:0003677
Trre16g01641 195 Pfam B3 DNA binding domain 86 177 IPR003340 GO:0003677
Trre16g01641 195 ProSiteProfiles B3 DNA-binding domain profile. 86 184 IPR003340 GO:0003677
Trre16g01641 195 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g01641 195 Gene3D - 66 185 IPR015300 -
Trre16g01641 195 SMART B3_2 86 184 IPR003340 GO:0003677
Trre16g01641 195 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01641 Trre-Chr16 13108868 13109962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01641 74 178 REM Transcription Factor Family AT4G31690 24.762 7.45e-08 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g01641 B3 2.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01641 - - tpra:123894507 322.783