Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01639 ATGACACATCTGCTGCAAGCTTTGTCTACTGAAGGAACCATGTCGAGGATATATGTGAAGAATCTCCCTAAATATGTTACGGAGGATCGACTAAGAGACTTATTTTCTCAGAAAGGAGAAATAACCGAGGTCAAGCTTATGCGTACCAAAAACGGAGAAAGTCGCCAATTTGCCTATATTATATTTCGTACAGACCAGGAAGCTCAGGAAGCAATCCGACATTTTAATAAATCTCTCCTTGGCCCACTCATAATTACTTGTGAGGTGGTTCGAATGCTCCCTGATGCAAATCTTCCTCGTTGGCGGATTGTATCCAATGATGGCAACAACCAAGCAACATTGAATAAGGAGACCAATGCTACATCAATTGCAAACCACGCTATCTTAAGCGACACACAAGTAGTTGGATTACCAAATAATTCCGAATCCAACAAGTCACGTGAGCTTAAGCGTGATGGAGTGATGTCTGACATTGATTATTTCCAGAGTAGAGTGACAACCGAGTGGTCCGATTCTGAAAGCTGTGATGATGAAAACGACAATGTCAACAGTGATTCAGAATCTGCTGACGATGATGACAAAGATAACCGTAGTCCTGCTAGTGAACATGAAGAAAATTGTGGTAATAACCCTTCTGAAAGAAACCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAGGGCCAAGAAGATACTTTCGGAGAGAACGTTGCCAATGCCAATGATAAGTACTCTCAAGTGACTGCAACTGAGGAAGAGGAGAAATCATCAAATCCAAAAGTTAAGAAAGAAGTTTCTGAGTCGTGTCGACTGTTTGTCCGTAATCTGCCATACACAACCACGGAGGAGGAACTGGAAGAGCATTTCGGTCAGTTTGGTGATGTCTTACAGATTCATTTAGTTGTTGATAAGGAAACAAAACGATCCAAAGGAATAGCTTATATTCATTTCTCAGTTCCAGATTTTGCAGCCAAGCGTTAG 978 0.4151 MTHLLQALSTEGTMSRIYVKNLPKYVTEDRLRDLFSQKGEITEVKLMRTKNGESRQFAYIIFRTDQEAQEAIRHFNKSLLGPLIITCEVVRMLPDANLPRWRIVSNDGNNQATLNKETNATSIANHAILSDTQVVGLPNNSESNKSRELKRDGVMSDIDYFQSRVTTEWSDSESCDDENDNVNSDSESADDDDKDNRSPASEHEENCGNNPSERNPRSGAQELDLEGQEDTFGENVANANDKYSQVTATEEEEKSSNPKVKKEVSESCRLFVRNLPYTTTEEELEEHFGQFGDVLQIHLVVDKETKRSKGIAYIHFSVPDFAAKR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01639 325 Gene3D - 5 92 IPR012677 -
Trre16g01639 325 MobiDBLite consensus disorder prediction 166 219 - -
Trre16g01639 325 SUPERFAMILY RNA-binding domain, RBD 262 323 IPR035979 GO:0003676
Trre16g01639 325 SUPERFAMILY RNA-binding domain, RBD 14 91 IPR035979 GO:0003676
Trre16g01639 325 PANTHER GEO13361P1-RELATED 252 322 - -
Trre16g01639 325 MobiDBLite consensus disorder prediction 190 210 - -
Trre16g01639 325 CDD RRM1_MRD1 15 89 - -
Trre16g01639 325 SMART rrm1_1 269 324 IPR000504 GO:0003723
Trre16g01639 325 SMART rrm1_1 16 88 IPR000504 GO:0003723
Trre16g01639 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 324 IPR000504 GO:0003723
Trre16g01639 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 79 IPR000504 GO:0003723
Trre16g01639 325 MobiDBLite consensus disorder prediction 172 189 - -
Trre16g01639 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 325 IPR000504 GO:0003723
Trre16g01639 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 92 IPR000504 GO:0003723
Trre16g01639 325 Gene3D - 235 324 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01639 Trre-Chr16 13081148 13085819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01639 14 86 Eukaryotic Initiation Factors Gene Family AT2G36660 41.333 2.27e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01639 K14787 - cit:102613427 209.534