Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01638 ATGCGACATGATACAATTGTAGAAAATGTTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTACTGGATAGAGAAGCTGATGATCTTGCTGTACGCATTGCTCTGGGAGAAACACAAGTGATTTCAGAAACAAAGAACGCATTTAGAAAAGCTGGAGTTAATTTGGAAGCTTTGGAGGAGCTTGCGAAGGGTAAAGTTGATGGCTTGAAAAGAAGCAACCATGTAATTTTAGCGAAAAACTTGCCCTATGGTGCTATAGAAAATGAAATTGCAATGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCACTCGACAAAAACATTGGTTGTTTTCCTTGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAATGGGCTCCTTCCAATGTTCTTAATCCAAAATCAACATCAAAAGATAATGAGATGAATAGTCGAATTGGTGAAAAGGATGTCAAACGACAGATATTGGAGCAAGACATCGAAAGAATATCAGATGTGGATATTGATCTAGACAGAGTAGAGAATGACACGAAAGTACAAAAGAGAGTCGAGAAACACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAACATTTAAAATTGCCAATGAAGTTTGGAAATTATAGAGGCTTTGCTTTTGTGGAGTATGTTACCCAGCAGGAGGCACAAAATGCTCTTACAGCTCTCTCAAGCACTCACTTGTATGGCAGACTTCTTAATATAGAGAGAGCGAATGAAGGTGATCGAAGTTTGGAGGAACTGCGGGCTCGAACTGCGGCTCACTTTAATGAACATAGCGGATATCAATGTGCTAATAACTTGTCCAAGAAAAGGAAAGCCATCAGTATGCTTGATGAAGAAAACATGAAGTTTAAAAGGTTTGATTAG 996 0.3835 MRHDTIVENVARKYGVSKSDLLDREADDLAVRIALGETQVISETKNAFRKAGVNLEALEELAKGKVDGLKRSNHVILAKNLPYGAIENEIAMMFGKFGSLDKIILHSTKTLVVFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSNVLNPKSTSKDNEMNSRIGEKDVKRQILEQDIERISDVDIDLDRVENDTKVQKRVEKHKSSTKLLVKNVAFEATKKDLRQLFSPFGQIKHLKLPMKFGNYRGFAFVEYVTQQEAQNALTALSSTHLYGRLLNIERANEGDRSLEELRARTAAHFNEHSGYQCANNLSKKRKAISMLDEENMKFKRFD 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01638 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 282 IPR000504 GO:0003723
Trre16g01638 331 SUPERFAMILY RNA-binding domain, RBD 71 157 IPR035979 GO:0003676
Trre16g01638 331 CDD RRM6_RBM19_RRM5_MRD1 206 280 - -
Trre16g01638 331 SMART rrm1_1 207 278 IPR000504 GO:0003723
Trre16g01638 331 SMART rrm1_1 75 140 IPR000504 GO:0003723
Trre16g01638 331 CDD RRM4_RBM19_RRM3_MRD1 74 143 - -
Trre16g01638 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Trre16g01638 331 SUPERFAMILY RNA-binding domain, RBD 202 290 IPR035979 GO:0003676
Trre16g01638 331 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 193 281 - -
Trre16g01638 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 144 IPR000504 GO:0003723
Trre16g01638 331 FunFam Multiple RNA-binding domain-containing protein 1 65 165 - -
Trre16g01638 331 Gene3D - 197 304 IPR012677 -
Trre16g01638 331 Gene3D - 67 169 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01638 Trre-Chr16 13079010 13080879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01638 208 279 Eukaryotic Initiation Factors Gene Family AT3G16380 36.111 7.85e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01638 K14787 - gmx:100798742 320.857