Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01637 ATGCGACATGATACAATTGTAGAAAATGTTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTACTGGATAGAGAAGCTGATGATCTTGCTGTACGCATTGCTCTGGGAGAAACACAAGTGATTTCAGAAACAAAGAACGCATTTAGAAAAGCTGGAGTTAATTTGGAAGCTTTGGAGGAGCTTGCGAAGGGTAAAGTTGATGGCTTGAAAAGAAGCAACCATGTTGTTTTCCTTGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAATGGGCTCCTTCCAATGTTCTTAATCCAAAATCAACATCAAAAGATAATGAGATGAATAGTCGAATTGGTGAAAAGGATGTCAAACGACAGATATTGGAGCAAGACATCGAAAGAATATCAGATGTGGATATTGATCTAGACAGAGTAGAGAATGACACGAAAGTACAAAAGAGAGTCGAGAAACACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAACATTTAAAATTGCCAATGAAGTTTGGAAATTATAGAGGCTTTGCTTTTGTGGAGTATGTTACCCAGCAGGAGGCACAAAATGCTCTTACAGCTCTCTCAAGCACTCACTTGTATGGCAGACTTCTTAATATAGAGAGAGCGAATGAAGGTGATCGAAGTTTGGAGGAACTGCGGGCTCGAACTGCGGCTCACTTTAATGAACATAGCGGATATCAATGTGCTAATAACTTGTCCAAGAAAAGGAAAGCCATCAGTATGCTTGATGAAGAAAACATGAAGTTTAAAAGGTTTGATTAG 885 0.391 MRHDTIVENVARKYGVSKSDLLDREADDLAVRIALGETQVISETKNAFRKAGVNLEALEELAKGKVDGLKRSNHVVFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSNVLNPKSTSKDNEMNSRIGEKDVKRQILEQDIERISDVDIDLDRVENDTKVQKRVEKHKSSTKLLVKNVAFEATKKDLRQLFSPFGQIKHLKLPMKFGNYRGFAFVEYVTQQEAQNALTALSSTHLYGRLLNIERANEGDRSLEELRARTAAHFNEHSGYQCANNLSKKRKAISMLDEENMKFKRFD 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01637 294 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 159 244 - -
Trre16g01637 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 238 IPR000504 GO:0003723
Trre16g01637 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 245 IPR000504 GO:0003723
Trre16g01637 294 SMART rrm1_1 170 241 IPR000504 GO:0003723
Trre16g01637 294 Gene3D - 40 132 IPR012677 -
Trre16g01637 294 Gene3D - 160 267 IPR012677 -
Trre16g01637 294 SUPERFAMILY RNA-binding domain, RBD 165 253 IPR035979 GO:0003676
Trre16g01637 294 CDD RRM6_RBM19_RRM5_MRD1 169 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01637 Trre-Chr16 13079010 13080879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01637 171 242 Eukaryotic Initiation Factors Gene Family AT3G16380 36.111 4.78e-08 52.0