Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01634 ATGGCAGAAGTTATCACCAACATTCCCTCCGATTCCCTCGACAAATCCCCAACCTCCTCCGCCCCTCCTCCACCACCACCACCACCACCTCCTCCCTCTTCTTCCGCCGCCGATTCCGATCTCCCTCCACCTTCTCATCCACCTCCACACTCCTCCTATCGCCGTAGAGACTACCGCAGAGACGATAGAGATTTCGATCGTCCTCCTAATCGCCGTGATTACTATGACCGTAACATGTCTCCGCCGCCAAGGGATAGAGATAGAGACTTCAAGCGTAGGCGTAGTCCCAGTCCTCCGTATCGTGATCGCCGATATTCTCCACCGCCGCGCCGATCGCCTCCGCATTACAATTACAAGCGCTCCAGGAGAGGTGGCAGTCCTCGTGGTGGTTATGGACCCGATGATAGATCTGGATATGATCATTACGGTGGTTATGATAGGGGTGGAAGAGGTGGTTATGATAGGGGTGGAAGAGGTGGTAATGATAGGGGTGGAAGAGGTGGTTATGCTGATGACAGGTCTTATGGTAGGTTTGGAAATCGTTCTGCAGCAGGATATCAAAATGGGATCTCTGATATGGAATACAATCGTGGTTTTGCAGACTTGCCAATTGGTGGTGCACAAAGAGAAGGGTTGATGTCCTATAAACAATTCATTCAGGAGCTTGAGGATGATATACTACCAACTGAAGCAGAACGTAGGTATCAAGAATACAGAACAGAGTACATTTCTACCCAAAAGAGAGCTTATTTCAATGCTCATAAGGATGAGGAGTGGTTGAAAGATAAATATCATCCAACAAATTTGCTCGCTGTCATTGAAAGGAGGAATGAAAGTGCTCGCCAGCTGGCAAAGGAGTTTTTGCTTGATTTGCAGAGTGGAACATTAGATATAAATCCGGGTTTAAGTGCCTCTTCATCCAGCAAATCAGGACAAGCTAGCGAGCCAAATTCAGAGGAGGAAGCGGATGGTAAACGAAGAAGACATGGAAGAGGTTCTAATAAACAAAGTGATTTCTCAGCTGCTCCAAAGACTCATCCTATCAGTTCTGAACCTAAAAGAATACAAGCAGATGTTCAACAGGCTCAGTCTCTTGTTCACAAGCTTGACACTGAAAAGGGGATTGGAGACAATATTTTATGCAGCAGTGATCACAGTAAAGCTGATGATAAGTCTCATGGTGGATCTGCAGGCCCCACAGTCATTATACGAGGCCTAACATCTGTTAAGGGTTTAGAAGGTGTTGAGCTTTTGGACACACTTATTACATATTTGTGGAGGATTCATGGTGTAGATTACTATGGCATGATTGAGACTAATGACGCTAAGGGTTTTAGACATGTGAGGCCAGAAAGAACAGGGAATGCAGAAACTGGTAAATCAGGGTCTGAATGGGAGAAGAAACTTGACTCATTTTGGCAGGGAAGGTTGAATGGTCAGGATCCATTGGAAGTAATGGCTGCTAAGGAGAAAATAGAAGCTGCAGCAGTTGAAGTGTTGGATCCATATGTTAGAAAAATCAGGGATGAAAAATATGGATGGAAGTATGGTTGTGGAGCTAAAGGCTGCACAAAGCTTTTTCATGCTGCTGAATTTGTGTATAAACATCTGAAGCTAAAACACCCAGAGCTTGCTCTTGAACAAACTTCAAAACTGCGTGAGGATCTCTATACTCAAAATTACATGAATGATCCAGATGCTCCTGGTGGAAAGCCTGTCATGCAGCAACCTCAGAAGGACAACAAGCCTTTAAATCGAAGGTTAGGTATGGAGGGCCGATTGAGAGATGATCGTGGTAATCGTCGAGACCATGAACGGAATGACAGAATAAATGACGGAGATAGACCTGATTCCCCATCCCATGAAAGGCAGTCTAAAGCACTTGAGATGGGAAACCACGATGAAACAATGTATGACGCTTATGCAGGGCCTGGGGTTCCTCCTTTTTCCTCGGATATGCCTCCGCCAGTATTGATGCCTGTACCTGGTGCTGGGCCATTAGGACCTTTTGTTCCTGCTCCACCAGAAGTTGCAATGCAAATGTTAAGAGAACAAGGAGGGCCATCTTCATTTGATGCCTCTGGAAGAAATATGCTGTCTGGACCTCCTATAGGAGGACCGACACCAATAATTGCTGTTCCTCCTGCTTTTAGACCAGATCCTCGGAAGATGCGAAGTTATCGAGATTTGGATGCTCCAGACGACGAGGTCACCGTGATAGACTATCGAAGTTTGTAG 2238 0.4589 MAEVITNIPSDSLDKSPTSSAPPPPPPPPPPPSSSAADSDLPPPSHPPPHSSYRRRDYRRDDRDFDRPPNRRDYYDRNMSPPPRDRDRDFKRRRSPSPPYRDRRYSPPPRRSPPHYNYKRSRRGGSPRGGYGPDDRSGYDHYGGYDRGGRGGYDRGGRGGNDRGGRGGYADDRSYGRFGNRSAAGYQNGISDMEYNRGFADLPIGGAQREGLMSYKQFIQELEDDILPTEAERRYQEYRTEYISTQKRAYFNAHKDEEWLKDKYHPTNLLAVIERRNESARQLAKEFLLDLQSGTLDINPGLSASSSSKSGQASEPNSEEEADGKRRRHGRGSNKQSDFSAAPKTHPISSEPKRIQADVQQAQSLVHKLDTEKGIGDNILCSSDHSKADDKSHGGSAGPTVIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMIETNDAKGFRHVRPERTGNAETGKSGSEWEKKLDSFWQGRLNGQDPLEVMAAKEKIEAAAVEVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELALEQTSKLREDLYTQNYMNDPDAPGGKPVMQQPQKDNKPLNRRLGMEGRLRDDRGNRRDHERNDRINDGDRPDSPSHERQSKALEMGNHDETMYDAYAGPGVPPFSSDMPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSSFDASGRNMLSGPPIGGPTPIIAVPPAFRPDPRKMRSYRDLDAPDDEVTVIDYRSL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01634 745 Pfam SERRATE/Ars2, N-terminal domain 216 297 IPR021933 -
Trre16g01634 745 MobiDBLite consensus disorder prediction 686 730 - -
Trre16g01634 745 MobiDBLite consensus disorder prediction 50 109 - -
Trre16g01634 745 ProSitePatterns Zinc finger C2H2 type domain signature. 518 541 IPR013087 -
Trre16g01634 745 MobiDBLite consensus disorder prediction 299 315 - -
Trre16g01634 745 MobiDBLite consensus disorder prediction 299 364 - -
Trre16g01634 745 MobiDBLite consensus disorder prediction 1 174 - -
Trre16g01634 745 PANTHER ARSENITE-RESISTANCE PROTEIN 2 54 743 IPR039727 GO:0006397
Trre16g01634 745 MobiDBLite consensus disorder prediction 18 49 - -
Trre16g01634 745 MobiDBLite consensus disorder prediction 560 624 - -
Trre16g01634 745 MobiDBLite consensus disorder prediction 584 624 - -
Trre16g01634 745 MobiDBLite consensus disorder prediction 139 170 - -
Trre16g01634 745 SUPERFAMILY Formin homology 2 domain (FH2 domain) 22 32 - -
Trre16g01634 745 Pfam Arsenite-resistance protein 2 458 645 IPR007042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01634 Trre-Chr16 13059909 13066745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01634 68 745 C2H2 Transcription Factor Family AT2G27100 61.538 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01634 K27103 - gmx:100817569 978.778