Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01633 ATGGCAGAAGTTATCACCAACATTCCCTCCGATTCCCTCGACAAATCCCCAACCTCCTCCGCCCCTCCTCCACCACCACCACCACCACCTCCTCCCTCTTCTTCCGCCGCCGATTCCGATCTCCCTCCACCTTCTCATCCACCTCCACACTCCTCCTATCGCCGTAGAGACTACCGCAGAGACGATAGAGATTTCGATCGTCCTCCTAATCGCCGTGATTACTATGACCGTAACATGTCTCCGCCGCCAAGGGATAGAGATAGAGACTTCAAGCGTAGGCGTAGTCCCAGTCCTCCGTATCGTGATCGCCGATATTCTCCACCGCCGCGCCGATCGCCTCCGCATTACAATTACAAGCGCTCCAGGAGAGGTGGCAGTCCTCGTGGTGGTTATGGACCCGATGATAGGTTAGCATCTGGATATGATCATTACGGTGGTTATGATAGGGGTGGAAGAGGTGGTTATGATAGGGGTGGAAGAGGTGGTAATGATAGGGGTGGAAGAGGTGGTTATGCTGATGACAGGTCTTATGGTAGGTTTGGAAATCGTTCTGCAGCAGGATATCAAAATGGGATCTCTGATATGGAATACAATCGTGGTTTTGCAGACTTGCCAATTGGTGGTGCACAAAGAGAAGGGTTGATGTCCTATAAACAATTCATTCAGGAGCTTGAGGATGATATACTACCAACTGAAGCAGAACGTAGGTATCAAGAATACAGAACAGAGTACATTTCTACCCAAAAGAGAGCTTATTTCAATGCTCATAAGGATGAGGAGTGGTTGAAAGATAAATATCATCCAACAAATTTGCTCGCTGTCATTGAAAGGAGGAATGAAAGTGCTCGCCAGCTGGCAAAGGAGTTTTTGCTTGATTTGCAGAGTGGAACATTAGATATAAATCCGGGTTTAAGTGCCTCTTCATCCAGCAAATCAGGACAAGCTAGCGAGCCAAATTCAGAGGAGGAAGCGGATGGTAAACGAAGAAGACATGGAAGAGGTTCTAATAAACAAAGTGATTTCTCAGCTGCTCCAAAGACTCATCCTATCAGTTCTGAACCTAAAAGAATACAAGCAGATGTTCAACAGGCTCAGTCTCTTGTTCACAAGCTTGACACTGAAAAGGGGATTGGAGACAATATTTTATGCAGCAGTGATCACAGTAAAGCTGATGATAAGTCTCATGGTGGATCTGCAGGCCCCACAGTCATTATACGAGGCCTAACATCTGTTAAGGGTTTAGAAGGTGTTGAGCTTTTGGACACACTTATTACATATTTGTGGAGGATTCATGGTGTAGATTACTATGGCATGATTGAGACTAATGACGCTAAGGGTTTTAGACATGTGAGGCCAGAAAGAACAGGGAATGCAGAAACTGGTAAATCAGGGTCTGAATGGGAGAAGAAACTTGACTCATTTTGGCAGGGAAGGTTGAATGGTCAGGATCCATTGGAAGTAATGGCTGCTAAGGAGAAAATAGAAGCTGCAGCAGTTGAAGTGTTGGATCCATATGTTAGAAAAATCAGGGATGAAAAATATGGATGGAAGTATGGTTGTGGAGCTAAAGGCTGCACAAAGCTTTTTCATGCTGCTGAATTTGTGTATAAACATCTGAAGCTAAAACACCCAGAGCTTGCTCTTGAACAAACTTCAAAACTGCGTGAGGATCTCTATACTCAAAATTACATGAATGATCCAGATGCTCCTGGTGGAAAGCCTGTCATGCAGCAACCTCAGAAGGACAACAAGCCTTTAAATCGAAGGTTAGGTATGGAGGGCCGATTGAGAGATGATCGTGGTAATCGTCGAGACCATGAACGGAATGACAGAATAAATGACGGAGATAGACCTGATTCCCCATCCCATGAAAGGCAGTCTAAAGCACTTGAGATGGGAAACCACGATGAAACAATGTATGACGCTTATGCAGGGCCTGGGGTTCCTCCTTTTTCCTCGGATATGCCTCCGCCAGTATTGATGCCTGTACCTGGTGCTGGGCCATTAGGACCTTTTGTTCCTGCTCCACCAGAAGTTGCAATGCAAATGTTAAGAGAACAAGGAGGGCCATCTTCATTTGATGCCTCTGGAAGAAATATGCTGTCTGGACCTCCTATAGGAGGACCGACACCAATAATTGCTGTTCCTCCTGCTTTTAGACCAGATCCTCGGAAGATGCGAAGTTATCGAGATTTGGATGCTCCAGACGACGAGGTCACCGTGATAGACTATCGAAGTTTGTAG 2244 0.459 MAEVITNIPSDSLDKSPTSSAPPPPPPPPPPPSSSAADSDLPPPSHPPPHSSYRRRDYRRDDRDFDRPPNRRDYYDRNMSPPPRDRDRDFKRRRSPSPPYRDRRYSPPPRRSPPHYNYKRSRRGGSPRGGYGPDDRLASGYDHYGGYDRGGRGGYDRGGRGGNDRGGRGGYADDRSYGRFGNRSAAGYQNGISDMEYNRGFADLPIGGAQREGLMSYKQFIQELEDDILPTEAERRYQEYRTEYISTQKRAYFNAHKDEEWLKDKYHPTNLLAVIERRNESARQLAKEFLLDLQSGTLDINPGLSASSSSKSGQASEPNSEEEADGKRRRHGRGSNKQSDFSAAPKTHPISSEPKRIQADVQQAQSLVHKLDTEKGIGDNILCSSDHSKADDKSHGGSAGPTVIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMIETNDAKGFRHVRPERTGNAETGKSGSEWEKKLDSFWQGRLNGQDPLEVMAAKEKIEAAAVEVLDPYVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVYKHLKLKHPELALEQTSKLREDLYTQNYMNDPDAPGGKPVMQQPQKDNKPLNRRLGMEGRLRDDRGNRRDHERNDRINDGDRPDSPSHERQSKALEMGNHDETMYDAYAGPGVPPFSSDMPPPVLMPVPGAGPLGPFVPAPPEVAMQMLREQGGPSSFDASGRNMLSGPPIGGPTPIIAVPPAFRPDPRKMRSYRDLDAPDDEVTVIDYRSL 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01633 747 MobiDBLite consensus disorder prediction 1 180 - -
Trre16g01633 747 MobiDBLite consensus disorder prediction 562 626 - -
Trre16g01633 747 Pfam Arsenite-resistance protein 2 460 647 IPR007042 -
Trre16g01633 747 MobiDBLite consensus disorder prediction 50 109 - -
Trre16g01633 747 MobiDBLite consensus disorder prediction 149 172 - -
Trre16g01633 747 MobiDBLite consensus disorder prediction 586 626 - -
Trre16g01633 747 ProSitePatterns Zinc finger C2H2 type domain signature. 520 543 IPR013087 -
Trre16g01633 747 MobiDBLite consensus disorder prediction 18 49 - -
Trre16g01633 747 MobiDBLite consensus disorder prediction 688 732 - -
Trre16g01633 747 MobiDBLite consensus disorder prediction 301 317 - -
Trre16g01633 747 MobiDBLite consensus disorder prediction 301 366 - -
Trre16g01633 747 Pfam SERRATE/Ars2, N-terminal domain 218 299 IPR021933 -
Trre16g01633 747 SUPERFAMILY Formin homology 2 domain (FH2 domain) 22 32 - -
Trre16g01633 747 PANTHER ARSENITE-RESISTANCE PROTEIN 2 54 745 IPR039727 GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01633 Trre-Chr16 13059909 13066745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01633 68 747 C2H2 Transcription Factor Family AT2G27100 61.451 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01633 K27103 - gmx:100817569 986.097