Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01632 ATGGGATATGGAACAAGAAAACTCTCAGATGAGTATGAAGTTTCAGAGATTCTAGGTAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAAAAAATCAAACAATGAAGATGAAAAATCACAATCATCACAAGTAGTAGCAATAAAAACACTTAGAAGGGTAAGTTCTTCAAATAATCCAAGTGGATTACCAAGACAAAAAAAAGATGTTGGAGAAAGAAGTACAATGATGTTTCCGACATTTAGACAAGTTTCGGTTTCGGATGCATTATTAACAAATGAGATACTAGTAATGCGAAGAATAGTCGAAAACGTTTCGCCACATCCAAATGTGATTGATCTTTATGATGTTTATGAGGATATAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCCGGTGGCGAACTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAAACTGAAGCTGCAACTGTGGTTAATCAAATAGCTTCAGGGTTAGAAGCTATTCATAAAGCTAACATTGTTCATAGAGATTTGAAGCCTGAAAATTGTCTTTTTTTAGATGTTAGGAAAGATTCTAGTCTTAAAATAATGGATTTTGGGTTAAGTTCTGTTGAAGAGTTTACTGATCCTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGAGTCATTTTATATATCTTACTTTCAGGGTATCCACCTTTCATTGCTCAAAATAATCGCCAAAAACAACAAATGATACTTAATGGGAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATCAGCAAAGAATTTAATCTCAAGTCTTTTAACTGTTGATCCTAGTAAGAGACCTAGTGCTCAAGAGCTTCTAAGTGATCCATGGGTGAAAGGTGAGAAAGCCAAAGATGATCAAATGGACCCTGAGATTGTCTCAAGGTTACAAAGGTTTAATGCAAGACGCAAACTTCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACCATCTTCCTTAGAACCAAAAAATTGAAATCATTGGTTGGATCCTATGATCTCAAAGAAGATGAAATTGAAAATCTCAGGATACATTTCAAGAAAATATGTTCAGATAGAGACAATGCGACTCTGCCTGAGTTTGAGGAGGTGTTAAAAGCAATGAATATGCTATCATTGATACCTTTTGCAGCTCGTATATTTGACTTGTTTGATAACAACCGTGATGGAACCGTTGATATGCGAGAGATACTTTGTGGATTTTCTAGTCTCAAGAACTCCAAAGGAGAGGATGCTCTTCGATTATGCTTCCAGATGTATGACACAGATAGATCTGGATGCATCAGCAAGGAAGAAGTAGCATCTATGCTCAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAATTGGATGAGATTTTTGATTTAATGGATGCCAATAATGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAAAGAGATAGCTCACTTCAAGATGTAGTTCTCTCGTCTCTACGTGCATAA 1581 0.3618 MGYGTRKLSDEYEVSEILGRGGFSVVRKGTKKSNNEDEKSQSSQVVAIKTLRRVSSSNNPSGLPRQKKDVGERSTMMFPTFRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDINGVHLVLELCSGGELFDRIVAQDKYSETEAATVVNQIASGLEAIHKANIVHRDLKPENCLFLDVRKDSSLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMILNGNFSFYEKTWKGISQSAKNLISSLLTVDPSKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEDEIENLRIHFKKICSDRDNATLPEFEEVLKAMNMLSLIPFAARIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSSLRA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01632 526 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Trre16g01632 526 SUPERFAMILY Protein kinase-like (PK-like) 7 327 IPR011009 -
Trre16g01632 526 SMART serkin_6 12 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01632 526 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Trre16g01632 526 ProSiteProfiles Protein kinase domain profile. 12 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01632 526 Pfam EF-hand domain pair 442 511 IPR002048 GO:0005509
Trre16g01632 526 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 352 521 - -
Trre16g01632 526 CDD EFh 410 469 IPR002048 GO:0005509
Trre16g01632 526 Gene3D Phosphorylase Kinase; domain 1 3 132 - -
Trre16g01632 526 Gene3D - 329 521 - -
Trre16g01632 526 SMART efh_1 485 513 IPR002048 GO:0005509
Trre16g01632 526 SMART efh_1 443 471 IPR002048 GO:0005509
Trre16g01632 526 SMART efh_1 407 435 IPR002048 GO:0005509
Trre16g01632 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Trre16g01632 526 ProSitePatterns Protein kinases ATP-binding region signature. 18 49 IPR017441 GO:0005524
Trre16g01632 526 CDD EFh 444 511 IPR002048 GO:0005509
Trre16g01632 526 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Trre16g01632 526 Gene3D Transferase(Phosphotransferase) domain 1 133 328 - -
Trre16g01632 526 PRINTS Recoverin family signature 411 432 - -
Trre16g01632 526 PRINTS Recoverin family signature 435 454 - -
Trre16g01632 526 PRINTS Recoverin family signature 501 521 - -
Trre16g01632 526 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Trre16g01632 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 490 - -
Trre16g01632 526 Pfam Protein kinase domain 92 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01632 526 Pfam EF hand 411 427 IPR002048 GO:0005509
Trre16g01632 526 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Trre16g01632 526 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Trre16g01632 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 132 - -
Trre16g01632 526 CDD STKc_CAMK 12 308 - -
Trre16g01632 526 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 136 326 - -
Trre16g01632 526 SUPERFAMILY EF-hand 353 517 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01632 Trre-Chr16 13053565 13058238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01632 90 514 EF-hand Containing Proteins AT3G10660 36.842 1.97e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Trre16g01632 Pkinase 1.6e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01632 K13412 - gmx:732616 874.389