Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01626 ATGGTGGGTTCTAGAGTCTTACAAGGAGAATCATTGGAAGAATTTAATGAAGGGGTTGGTTATATTCTGAATCAATGGTTTGCTCTCCAAATCGCCATTGATTATGAGATGGGTGACAATAACTTTCATCCCAAAGTTGAAAAACTCATCGCCGACGTGCGTTCTTGGTTTGCACAATCCAAAGAGCCATATCATATTGGTGAATTAGCAATCTTAATCAAGGAAGGCATGGATGCTGCTTTCGATCCAATGATTAAAGATGGTAGTGTTGAAGATGTGGCTGCAAAAATAATGGGTATACACGCAGACTGTAAACTTCAAAACTATGAAAATATCAAGCTTCTTAAAGAGCAGCAAGGGGAAATGAAGCGAGGGGAAATGAACGATCTTCTACTGCATGCATCAGAATGTCGTGCTGGTGCTGGTGCACGTTGCCGATTTCCTAATTGTTTCAAAGTGAAGGGCCTCTTTCGCCATGGTATGCGCTGCAGAACACGTGCTTCCGGAGGCTGCGATCTTTGCAAGAAAATGTGGTTTTTGTTGCAATTGCATGCTTGTGCATGCAACAAAGCAGAGTGCAACGTGCCACGATGCAGTGATATCAAAGAACATCTAAGGAGGCTGCAACAACCTAATGGAAATGATGAGGCATAA 654 0.4251 MVGSRVLQGESLEEFNEGVGYILNQWFALQIAIDYEMGDNNFHPKVEKLIADVRSWFAQSKEPYHIGELAILIKEGMDAAFDPMIKDGSVEDVAAKIMGIHADCKLQNYENIKLLKEQQGEMKRGEMNDLLLHASECRAGAGARCRFPNCFKVKGLFRHGMRCRTRASGGCDLCKKMWFLLQLHACACNKAECNVPRCSDIKEHLRRLQQPNGNDEA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01626 217 SMART TAZ_2 118 199 IPR000197 -
Trre16g01626 217 ProSiteProfiles Zinc finger TAZ-type profile. 115 201 IPR000197 -
Trre16g01626 217 Pfam TAZ zinc finger 128 198 IPR000197 -
Trre16g01626 217 Gene3D TAZ domain 113 217 IPR035898 -
Trre16g01626 217 Pfam Pre-rRNA-processing protein TSR2 15 94 IPR019398 -
Trre16g01626 217 PANTHER CBP/P300-RELATED 124 210 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre16g01626 217 SUPERFAMILY TAZ domain 121 203 IPR035898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01626 Trre-Chr16 12998779 13001091 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Trre16g01626 WGG 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01626 K04498 - tpra:123894519 192.2