Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01619 ATGTCAAGTACCACATCAACATCCTTCATAGTCCCTTTTCTTTGCATTTTCCTTCTTTTACCCTTACTCCTCCTAGCTCAAGCACCTTCTCCATCTCCATCTCCATCTCCTTCTACTTCTACTTCTACCTCAAAAGCATGCAAATCAACATTATATCCAAAACTATGCCGTTCGATTCTCTCCTCCATCCGATCGTCACCAACAGATCCCTACCACTTAGGAAAATTCTCAATAAAACAAAGCCTAAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTTCTCAAAAAACACCACCAATCTTCTCTCAACCAAGCCGAGATCGCAGCACTAGACGATTGTAGCGAACTAAACCAACTTAATGTAGACTACTTAGAGTTAGTTAGAGATGTACTAAAATCAGCAGATTCATCATCTTTCAATAACACCGATGTGTTGGTTGAAAATGTTGAAACTTATCTTAGTGCTGTGGCTACTAACCATTATACTTGTTATGATGGATTGGTTGTGACTAAAAGTAACATTGCTAATTCACTAGCAGTTCCTTTGAGTAATGTTACACAATTGTATAGTATTTCACTTGGGTTGGCTACACAAGCTTTGAATAAAAATATTAAGAAGCATAAGACTCGTAAACATGGTCTTCCTACTAAGACTTTTAAGGTCAGACAGCCACTTAAAAAGCTCATTAAGCTTCTTCGAACAAAATTCAGTTGCAATAAATCATCCAACTGTACAAGAACAGAAAGGATTCTTCAAGAAAGTGAAAATAAAGGAATTCTACTAAAAGAATTTGTTATTGTGAGTCTTGATGGAACAGAAAACTTCACTTCAATTGGAGAAGCTATTGATACTGTACCTGATAATTTAAAAGCAGAAGATGGCTATTTTCTTATCTATGCTAAAGAAGGATTATATGAGGAATATATCACCATTCCAAAACAAAAGAAAAATATTTTGCTTATTGGTGATGGAATTGACAAAACTTGTATCACAGGAAATCATAGTGTTGTAGATGGTTGGACAACTTTTAATTCTTCAACCTTTGCTGTGGCTGGAGAAAGATTTATAGCAGTAGACATAACATTCAGAAACACAGCAGGACCAGAAAAGCATCAAGCAGTAGCAGTAAGAAACAATGCAGATCTTTCCATATTCTACCGTTGTAGTTTTGAAGGATACCAAGACACACTCTATGTTCACTCTCTTAGACAATTCTATAAAGAATGTGATATCTATGGCACAGTTGATTTCATTTTCGGTAACGCTGCCGCAGTACTTCAAAATTGTAACATCTATGCAAGAAAACCAATGGCAAATCAAAAAAATGCAGTAACAGCACAAGGTAGAACTGATCCAAATCAAAACACAGGAATCTCAATACAAGATTGTAGAATTGATGCTGCACAAGACTTAGCTGAAGATATGAATGTAACTAAAAATTACTTAGGAAGACCATGGAAACTTTATTCAAGAACTGTTTATTTACAATCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGAACAGTTGGATTAGATACACTTTTTTATGGTGAATATGATAATTTTGGACCTGGTGCTATAACTAATAATAGGGTACAATGGCATGGTTATAATTTGTTGACTCCTTCTCAAGCTTGGAATTTCACTGTCCTTAATTTTACTTTAGGGAATACTTGGATTCCTGATACAGATGTACCTTATACTGAAGGACTGCATGATAATTAG 1749 0.3516 MSSTTSTSFIVPFLCIFLLLPLLLLAQAPSPSPSPSPSTSTSTSKACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFKDFLKKHHQSSLNQAEIAALDDCSELNQLNVDYLELVRDVLKSADSSSFNNTDVLVENVETYLSAVATNHYTCYDGLVVTKSNIANSLAVPLSNVTQLYSISLGLATQALNKNIKKHKTRKHGLPTKTFKVRQPLKKLIKLLRTKFSCNKSSNCTRTERILQESENKGILLKEFVIVSLDGTENFTSIGEAIDTVPDNLKAEDGYFLIYAKEGLYEEYITIPKQKKNILLIGDGIDKTCITGNHSVVDGWTTFNSSTFAVAGERFIAVDITFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYKECDIYGTVDFIFGNAAAVLQNCNIYARKPMANQKNAVTAQGRTDPNQNTGISIQDCRIDAAQDLAEDMNVTKNYLGRPWKLYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEYDNFGPGAITNNRVQWHGYNLLTPSQAWNFTVLNFTLGNTWIPDTDVPYTEGLHDN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01619 582 Pfam Plant invertase/pectin methylesterase inhibitor 44 196 IPR006501 GO:0004857
Trre16g01619 582 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Trre16g01619 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 201 IPR035513 -
Trre16g01619 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 200 IPR035513 -
Trre16g01619 582 SUPERFAMILY Pectin lyase-like 264 578 IPR011050 -
Trre16g01619 582 NCBIfam pectinesterase inhibitor domain 16 200 IPR006501 GO:0004857
Trre16g01619 582 Pfam Pectinesterase 267 564 IPR000070 GO:0030599|GO:0042545
Trre16g01619 582 CDD PMEI-like_3 46 208 - -
Trre16g01619 582 FunFam Pectinesterase 261 579 - -
Trre16g01619 582 Gene3D - 262 579 IPR012334 -
Trre16g01619 582 SMART PMEI_2 38 197 IPR006501 GO:0004857
Trre16g01619 582 PANTHER PECTINESTERASE 23 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01619 Trre-Chr16 12961806 12966514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01619 46 579 Carbohydrate Esterase AT3G10720 61.255 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01619 K01051 - gmx:100808277 874.389