Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01618 ATGTCTTCTTTTAAGGCCTATGGTAAAGTCGATGAATCCGAGCATGCCCTATTTGAAGTTCGAAGGAAATCTCGAAAGCGAATAACAATCATAAGCTTGTCCACAATTGTCTTAGTCGGTATTGTATTTGCAGCGGTTTTCGGAACCATTGCTCACAACAATGGTCATAATGACAATAACAACAACAACAATGACCAATCTCTTTCGAGTTCGGTGAAGGCTATTTGTGATATTACATTGTACAAGGATTCATGTGAAAGCAGCCTTAGTCCTCTTGTTCATTCGGGTCAACAAATTCGACCCGAGGAGTTGTTCAAGTTGTCAATTCAAGTCGCATTAAATGCGGTTTCGAAAGGTGCTCAGTATTTTTCTGAGCATGGAACTTTTGATGACTTGAATTTGAATGTTGATAATAGAACAAAGGAAGCTTTGATGAATTGTAAGGATCTTTTGGATCTTACTATTGATCATTTGAATAGCTCTTTGTCTTATGGAGGGAAGTCTTCTTTGCTTGATGTTTTGGAGGACCTTGAAACTTGGTTAAGTGCTTCAGGTACTTACCAGCAAACATGCATTGATGGTTTAGAAGAGGCTGAAGAAGCATTAAAGTCAAGTATTACAACCAATCTCAAAAACTCTACAGAATTCACAAGCAACAGTCTTGCAATCATCACATGGCTTAACAAGGCAGCAAATTCAGTCAAGTTTAGACGCTTATTGAGTTTGTCTCATCAAAATGAAGAACCAAATTGGCTTCATCCTAATGACAGAAAGTTACTTCAAAAAGACACTGATTTGAAGAAGAAAGCCGACATTGTTGTTGCGAAAGACGGGAGTGGAAAATACAAAACAATTTCAGCTGCATTGAAACATGTCCCTGATAAAAGTGACAACAGGACTGTGATTTATGTGAAAAATGGGACTTATTATGAAAATGTTAGGGTGGAAAAGACTAAATGGAATGTTATGATTATTGGTGATGGTATGAATGTTACTACTGTTTCTGGAAGTCTAAATTTTGTGGATGGTACACCAACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATTGCTAGGGACATAGGCTTTAAGAACACAGCTGGTCCACAAAAGCACCAAGCAGTAGCACTAATGACAAGTGCAGATCAAGCAGTTTTCTACAAATGTTCCATAGATGCATATCAAGACACTCTCTACGCTCACTCGAATCGGCAATTCTACCGCGAATGCAACATCTACGGAACAGTCGATTTCATTTTCGGAAACTCAGCCGTTGTCTTACAAAACTGCAACATTTTACCAAGACAACCAATGCAAGGACAACAAAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGAATTTCAATTCAAAATTGCAATGTTTCGCCATTCGGAAACTTGAGTTCTGTTAACACATATTTAGGAAGACCTTGGAAGAATTACTCGACGACGGTGTTTATGCAATCTACATTGGGAGATTTTATTAGTCCAAATGGTTGGTTACCTTGGATTGGAGATTCTGCACCAGATACTATATTCTATGCTGAATTTCAAAATGTTGGAAAAGGTTCTTCAACAAAGAATAGGGTGAAGTGGAAAGGTGTGAAAAATATTACAAATAAAGAAGCTAAGAAATTTACAGTTAAGGCTTTTCTTTCTGGTGATAAATGGATTCCTGATTCTGGTGCTACATATAAATCATCACTTTAA 1734 0.3743 MSSFKAYGKVDESEHALFEVRRKSRKRITIISLSTIVLVGIVFAAVFGTIAHNNGHNDNNNNNNDQSLSSSVKAICDITLYKDSCESSLSPLVHSGQQIRPEELFKLSIQVALNAVSKGAQYFSEHGTFDDLNLNVDNRTKEALMNCKDLLDLTIDHLNSSLSYGGKSSLLDVLEDLETWLSASGTYQQTCIDGLEEAEEALKSSITTNLKNSTEFTSNSLAIITWLNKAANSVKFRRLLSLSHQNEEPNWLHPNDRKLLQKDTDLKKKADIVVAKDGSGKYKTISAALKHVPDKSDNRTVIYVKNGTYYENVRVEKTKWNVMIIGDGMNVTTVSGSLNFVDGTPTFSSATFAVFGKNFIARDIGFKNTAGPQKHQAVALMTSADQAVFYKCSIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPRQPMQGQQNTITAQGKTDPNMNTGISIQNCNVSPFGNLSSVNTYLGRPWKNYSTTVFMQSTLGDFISPNGWLPWIGDSAPDTIFYAEFQNVGKGSSTKNRVKWKGVKNITNKEAKKFTVKAFLSGDKWIPDSGATYKSSL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01618 577 NCBIfam pectinesterase inhibitor domain 53 227 IPR006501 GO:0004857
Trre16g01618 577 Gene3D - 266 577 IPR012334 -
Trre16g01618 577 Pfam Pectinesterase 271 563 IPR000070 GO:0030599|GO:0042545
Trre16g01618 577 Pfam Plant invertase/pectin methylesterase inhibitor 71 223 IPR006501 GO:0004857
Trre16g01618 577 CDD PMEI-like_3 74 229 - -
Trre16g01618 577 PANTHER PECTINESTERASE 37 567 - -
Trre16g01618 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 229 IPR035513 -
Trre16g01618 577 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Trre16g01618 577 FunFam Pectinesterase 265 577 - -
Trre16g01618 577 FunFam Pectinesterase 68 228 - -
Trre16g01618 577 SUPERFAMILY Pectin lyase-like 269 572 IPR011050 -
Trre16g01618 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 227 IPR035513 -
Trre16g01618 577 SMART PMEI_2 67 223 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01618 Trre-Chr16 12956756 12960863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01618 7 577 Carbohydrate Esterase AT3G10710 57.417 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01618 - - gmx:100808802 890.182