Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01612 ATGATGGAAGAAGACAACACTGTTATTGACAAATCTAAGATTGTAGAAGTGAAACCCTTGCGTAGTTTAGCTCCTGTATTACCAAACAATGTTCAATCCTTTTTTTCTGGTCAATACCCATCTGGGTTTTCACCATTTTGTTCATTTGTAAAACCCCAACAAATTCCTGTTATAAATGAAACTGAGGAAGTTTCTATTAATGGCAATGCAACAGTAGATGATACTCCTGTTGCTCCGAAACCGACTCCGGAAACTCCTGTTGCTGCTAAGGTGACTCCAATTAGGTCATATAAGAGTTCACATGATGAAGAAGTGAATGTGAATCATCGAGCTGGCGGAGATGGAGATGGAGATGGAGATGATCGTTTGTTTTCGGAAGGGTTGAATGGTGATGATTGGGGAGGTTGTAGTAGAAAGCGAGGTACACAGAATATAGAGAGCTGCAAAGAGTTTCTTAAAAGGAAGAAGAATAAGAAAACTAGGGAGCCAACTATTGGTGTTGGTGGTTACCCGACTCTAAAAGAGGACGGTGATCACGAAGCAGTTAATTATGTGCTCATGTCATATGATTCGCTTCGAAGGAGGATCTGTCAACTTGAAGAATCGAAGGAACTGGGTAATGCACTTGCCAAGCGTCCAGATCTTAGAGCAAGTAATGCTTTGACGTGTAATGGGGTTAAAACAAACACGAGGAGAAGAGCAGGAGTGGTTCCTGGGATTGAGGTTGGGGACATTTTCTTTTTTCGGATGGAAATGTGTCTTGTGGGTTTACATGCTCAATCAATGGGTGGAATTGATTACATGAACATCAAGGATGGGTCTAAGGAGGATTCTATGGCGATAAGTGTTGTTTCATCAGGAGTGTATGGTGATGAATCAAAGAATAATGATGTTTTATATTATAGTGGTTCGGGTGAGAATTTCAACAAGAAAGATAAACATGTGTCTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGAACAGAAGTGCGGAACGGCACGACGAAGTTAGAGTCATTCGGGGCTTGAGAGATACTGTGAATAGAAGTGCAAAAATCTATATGTATGATGGTTTGTATAAAATCCAAGATTCTTGGATTGAAAAAGAGAAGTCTGGTGGTGGTGTTTTTAAGTATAGGATGGTAAGGTTGCCTGGTCAGAAAAGTGCTTATGCTTCTTGGATGTTGGCTCAAAAGTGGAAGGTAGATTCCTCCTCAAGGAATGGTTTTATTCTTGCTGACCTCTCTAATGGAGTTGAAAGTATTCCAGTATCACTTATCAATGATGTTGATAATGAAAAGGGTCCTGCTTTTTTCACTTATTTCATGTCTCTCAAAAATCCGAAACCTTTTGATTTAGCGCAGCCTTCATTTGGCTGTAATTGTAACAAAGCATGTATCCCTGGTGATTTGAACTGTTCATGCATTCAAAGAAACGAAGGCGATTTTCCTTATATTGCAAATAGTATTCTAGTGACTCGGAAGCCAATGATTCATGAATGTGGCCCTTTGTGTCAGTGTTTTCCTAACTGCAAAAACCGAGTATCGCAGACTGGTTTAAAACAATTCTTGGAGGTGTTCAAAACAAAGGGTAGAGGTTGGGGGCTTCGAACACTGGATCCTATACGTGCCGGTACCTTTATTTGTGAGTATGCTGGAGAAGTTATTGACAGAGATACGGCATATCAAAATGGGGAAGGAGATAATGATGAATATGTTTTCGATACAAGCCGTATTTATGTACCATTCACGTGGAATCATGATTCTAACCTATTGGTAGAAGTAAGTTCAAATGTTTCAAGCGAGGATTATACTATACCATCTCCTCTAATAATAAGTGCTAAGAATGTGGGAAATGTGGCTAGATTCATGAACCATAGTTGCTCCCCAAATGTGTTTTGGCAGCCAGTTTCATATGCAGAAAACAATCAATCCTTTCTCCACATTGCATTTTTTGCCCTTAGGCATATTCCTCCAATGGCAGAGTTGACATATGATTATGGAGTTGTCCCTACTGGTCGTGGTACACTCAGAAGGAGAAAGAAATGCTTGTGTGAATCGGAAAATTGCCGTGGTTTCTTTGGTTGA 2088 0.4004 MMEEDNTVIDKSKIVEVKPLRSLAPVLPNNVQSFFSGQYPSGFSPFCSFVKPQQIPVINETEEVSINGNATVDDTPVAPKPTPETPVAAKVTPIRSYKSSHDEEVNVNHRAGGDGDGDGDDRLFSEGLNGDDWGGCSRKRGTQNIESCKEFLKRKKNKKTREPTIGVGGYPTLKEDGDHEAVNYVLMSYDSLRRRICQLEESKELGNALAKRPDLRASNALTCNGVKTNTRRRAGVVPGIEVGDIFFFRMEMCLVGLHAQSMGGIDYMNIKDGSKEDSMAISVVSSGVYGDESKNNDVLYYSGSGENFNKKDKHVSDQKLQRGNLALNRSAERHDEVRVIRGLRDTVNRSAKIYMYDGLYKIQDSWIEKEKSGGGVFKYRMVRLPGQKSAYASWMLAQKWKVDSSSRNGFILADLSNGVESIPVSLINDVDNEKGPAFFTYFMSLKNPKPFDLAQPSFGCNCNKACIPGDLNCSCIQRNEGDFPYIANSILVTRKPMIHECGPLCQCFPNCKNRVSQTGLKQFLEVFKTKGRGWGLRTLDPIRAGTFICEYAGEVIDRDTAYQNGEGDNDEYVFDTSRIYVPFTWNHDSNLLVEVSSNVSSEDYTIPSPLIISAKNVGNVARFMNHSCSPNVFWQPVSYAENNQSFLHIAFFALRHIPPMAELTYDYGVVPTGRGTLRRRKKCLCESENCRGFFG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01612 695 Gene3D SET domain 404 694 IPR046341 -
Trre16g01612 695 ProSiteProfiles Post-SET domain profile. 679 695 IPR003616 -
Trre16g01612 695 ProSiteProfiles SET domain profile. 522 668 IPR001214 GO:0005515
Trre16g01612 695 Pfam SAD/SRA domain 234 387 IPR003105 -
Trre16g01612 695 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 53 688 - -
Trre16g01612 695 SUPERFAMILY SET domain 421 692 IPR046341 -
Trre16g01612 695 Pfam Pre-SET motif 416 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre16g01612 695 SMART set_7 522 674 IPR001214 GO:0005515
Trre16g01612 695 ProSiteProfiles YDG domain profile. 235 383 IPR003105 -
Trre16g01612 695 Pfam SET domain 533 668 IPR001214 GO:0005515
Trre16g01612 695 Gene3D - 217 401 IPR036987 -
Trre16g01612 695 ProSiteProfiles Pre-SET domain profile. 458 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre16g01612 695 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 15 695 IPR025794 GO:0016571
Trre16g01612 695 SMART preset_2 412 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre16g01612 695 SMART G9a_1 230 387 IPR003105 -
Trre16g01612 695 MobiDBLite consensus disorder prediction 97 119 - -
Trre16g01612 695 SUPERFAMILY PUA domain-like 232 418 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01612 Trre-Chr16 12900151 12902238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01612 10 695 Su(var)3-9 homologs AT1G73100 47.405 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre16g01612 SAD_SRA 1.9e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01612 K24405 - gmx:100800651 877.47