Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01610 ATGCCTATCTTTGTTCTGCATCAAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGATGAGGGTATAGGGAAGATTCCTTCAAGATGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCTAATTGCAATAGAAAATTGATAGGTGCAAGATACTATGGTAAAAAAGATCCCAAGGGTTCACCAAGAGATTTTAATGGACATGGGAGCCACACTGCATCAACAGCAGCTGGTGCCATTGTTAACAATGCAAGTTATTTTGGTTTAGCAAAAGGAACAGCAAGAGGTGGTTCATCTTCTGCAAGGATTGCTGCCTATAAAGCATGCACAGAAAAAGGTTGCTCTGGTGGAACATTATTGAAGGCTATTGATGATGCTATCAAGGATGGAGTAGATATAATCTCAATCTCTATTGGATTTAGCTCAGAATTTCTATCAGAATATTTGAGTGATCCAATAGCTATTGGAGCATTTCATGCAGAACAAAGAGGTGTCATGGTTGTGTGTTCAGCTGGGAATGATGGTCCTGATCCTTCCACTGTTGTTAACACAGCACCATGGATATTTACAGTTGCAGCTTCTAATATTGATAGGAACTTTCAGTCAAGTGTTGTCCTTGGAAATGAGAAAAGTTTCAAAGGAACCGGCATTAACTTCTCTAACCTTACTCGCTCAACGATGCATTCTCTTGTCTTCGGAGAGGAAGTTGCAGCCAAATTTACATCAAAAACAGAAGCTAGGAACTGTTATCCAGGATCACTAGATAACAAAAAAGTTGCAGGAAAGATTGTTATTTGTGTTAACGATGATCAAAATATCACACGGAATATGAAGAAGCTAGTTGTACAAGATGTCGGAGCCATGGGGATGATACTCATTGAGAAGGAAAACATAGATGTTCCCTTTGATGCAGGTCTATTTCCCTTCACAGAAGTTGGCAATCTTGAAGGGTATCAAATCCTTAAGTACCTGAAATCTACCAAGAAACCAACTGCAACAATTCTTCCAACAACGGAAGTTCCTAGATATCGGCCTGCACCAATTGTTGCATCTTTCTCATCCAGAGGTCCTTCAAGCCTTACTGAAAACATTCTCAAGCCGGATGTCATGGCACCAGGCGTTTCGACATTGGCTGCTTTGATTCCTAAAAAAGAAAATGTTCCAATTGGGAAAAAACCATCCATGTTTGCCTTAAGATCTGGTACATCTATGGCTTGCCCTCATGTATCTGGTGCTGCAACATTCATCAAATCAGTACATGGAAGTTGGAGTCCTTCAATGATCAAATCAGCATTAATGACAACAGCTACAACCTACAATAACATGAGGAAGCAAGTGACCAATAGCTCAAACTACATTTCCAACCCACACGAAATGGGAGTCGGAGAAATCAATCCACTCAAAGCTCTCAACCCTGGTTTAGTCTTCGAAACAGATATCGAAGACCACATTCGATTCCTTTGTTATTATGGCTATTCAAACAAAACCATAAGATCAGTGTCTAAAACCAATGTAACTTGCCCAAGAACCTCTCATGATCTTATATCCAACATCAATTATCCATCAATCTCTATACAAACACTTAAAAGAAATCAGAAAGTAAGAATAATCACAAGAACAGTGACCAATGTAGGAACCTTAAATGCTACATATGTTGCAAAAGTGCATGCACCTGAAGGATTGGTTGTTAAGGTCATTCCCAACAAACTTGTATTTTCAGAAAGTGTTCAAAGAATTACCTATAAAGTCTCATTCTATGCCAAAGAAGCTCATGGTGGATACAATTTTGGGTCTATAACATGGCTTGATGGTAGACATTATGTTCACACAGTATTTGCAGTCCAAGTTGAATAA 1857 0.3926 MPIFVLHQGIWPESPSFRDEGIGKIPSRWKGVCMEGHDFKKSNCNRKLIGARYYGKKDPKGSPRDFNGHGSHTASTAAGAIVNNASYFGLAKGTARGGSSSARIAAYKACTEKGCSGGTLLKAIDDAIKDGVDIISISIGFSSEFLSEYLSDPIAIGAFHAEQRGVMVVCSAGNDGPDPSTVVNTAPWIFTVAASNIDRNFQSSVVLGNEKSFKGTGINFSNLTRSTMHSLVFGEEVAAKFTSKTEARNCYPGSLDNKKVAGKIVICVNDDQNITRNMKKLVVQDVGAMGMILIEKENIDVPFDAGLFPFTEVGNLEGYQILKYLKSTKKPTATILPTTEVPRYRPAPIVASFSSRGPSSLTENILKPDVMAPGVSTLAALIPKKENVPIGKKPSMFALRSGTSMACPHVSGAATFIKSVHGSWSPSMIKSALMTTATTYNNMRKQVTNSSNYISNPHEMGVGEINPLKALNPGLVFETDIEDHIRFLCYYGYSNKTIRSVSKTNVTCPRTSHDLISNINYPSISIQTLKRNQKVRIITRTVTNVGTLNATYVAKVHAPEGLVVKVIPNKLVFSESVQRITYKVSFYAKEAHGGYNFGSITWLDGRHYVHTVFAVQVE 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01610 618 FunFam subtilisin-like protease SBT1.5 198 341 - -
Trre16g01610 618 Gene3D - 198 342 - -
Trre16g01610 618 Pfam Subtilase family 54 442 IPR000209 GO:0006508|GO:0008236
Trre16g01610 618 Gene3D Peptidase S8/S53 domain 5 483 IPR036852 GO:0004252|GO:0006508
Trre16g01610 618 ProSiteProfiles Serine proteases, subtilase domain profile. 1 471 - -
Trre16g01610 618 CDD Peptidases_S8_3 5 438 IPR034197 -
Trre16g01610 618 ProSitePatterns Serine proteases, subtilase family, serine active site. 402 412 IPR023828 -
Trre16g01610 618 Gene3D - 488 617 - -
Trre16g01610 618 Pfam Fibronectin type-III domain 518 615 IPR041469 -
Trre16g01610 618 FunFam Subtilisin-like protease SBT1.5 2 225 - -
Trre16g01610 618 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 5 611 IPR045051 -
Trre16g01610 618 SUPERFAMILY Subtilisin-like 5 475 IPR036852 GO:0004252|GO:0006508
Trre16g01610 618 CDD PA_subtilisin_like 204 335 - -
Trre16g01610 618 PRINTS Subtilisin serine protease family (S8) signature 401 417 IPR015500 -
Trre16g01610 618 PRINTS Subtilisin serine protease family (S8) signature 65 78 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01610 Trre-Chr16 12885409 12888915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01610 3 615 Subtilisin-like Serine Gene Family AT1G20150 44.304 4.51e-179 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01610 K25898 - gmx:100809885 945.266