Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01604 ATGATGAGGCGGATGAAAAGGGAGATTGAGGATGAGATGTTCCACGATGGTCAGACTGGGTCACAGTTGGATGATGAGGGTTATGACGGAAGTGCCTGTGGAGTTGTGATGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGCCAATTATGTCAAGAAGAACGGAGAGGGGAACTGGAATGCTGTTCATAAGCATACAGGCCTTCTACGTTGTGGAAAAAGTTGTCGATTGCGGTGGGCTAATCACCTGAGGCCAAATTTAAAGAAAGGGACATTTACTGCAGGAGAGGAGCAGTTGATTTGTGAGCTTCATGCAAAAATGGGAAACAAATGGGCACGCATGGCAAGCTTTTTGCCTGGTCGTACAGATAATGAGATAAAGAACTATTGGAACACTCGGATCAAGAGGCGTAACCGAGCTGGCTTGCCACTTTATCCCCCTGAAGTATTGCAAAAGATTCTTCATGTGCAAAGCACTGGTGGAATTAATGGTCGCAATAAAGTGCGTCCTGATTTCTTGCAGAAAAAGTGTTTCGATAAACATGATGCAATATTTGACTCTCTGAAGGATAACCAGGGAATCTTACCTTATGTGCCTGAGCTTCCTGATATTTCTGCTTATGGCAATATGCTAAATGGTTTTGATTCTTCTCAGTATTGTAGTTTTGTGCCATCGACATCTTCTAACCACAAACGTTTCCGAGAGTCAACGATACCATTTCTTGATTTCAGTTATATTGACAGAAATGATTTTTATCCATTTGATCGTGTTCAGGATGATACTTTTGATAAGTTGACACAATCATTCGGGGTGCAACCACCCCTTGATCCTGGTCCCTCCTTACACAGCTCAATGTGTTACAGCCATTCAATTATGAATGACAATTCCTCTACTTCTAAGCCTTTCGAGGCTGCGAAATTGGAGCTCCCTTCACTCCAAAATTCAGAAATTGATTTAGGTAGCTGGGTTACATCTCCCCCGCCTCCTTTACTTGAGTCAATTGATGATTTCATTCAGTCTCCTGCACCAGTTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTTCTGCAATCTGTACTTTATCAGTGGAAGACTCCAAGCAGTTCAAAAAACCAATATTATGACAAGAGTTCAAATTCTTCCACTGCAACTCCTGGTGAAAGAGAAGACAGCTCTGCTTTGAACATGTGTGAGACAGAATGGGAAGACTATGCTGACCCTGTATCTCCATTTGGCGCGTCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAACAGAAATTCACTAGATGAGCAGCCACCTGTTCATACCATTAATGGTAACAATGTGAAATGCGAGTATGTTGACCAGGTTTGGACCCCTGATAGTGAAAATCAAACCACGTCTCTTTTGAACTTTAGTCGGCCCGATTTCTTGCTTGCTTCTGGTTGGTATGAGCCATACTCCGGGCATGACAAGAACCAATCCATGACTGGTGCTACATCAATGTTTTTCGAAGATCAATTAGCCACAGACTATAAACATACGACTGCTGGAACTTCTAACCCAAGTCAGGTATGGGAGTTTGGTTCTCTTGCATGGAACAACATGCCTGCTGTCTATCAAATATCTGATCTTGGTTAA 1647 0.4274 MMRRMKREIEDEMFHDGQTGSQLDDEGYDGSACGVVMKKGPWTSAEDDILANYVKKNGEGNWNAVHKHTGLLRCGKSCRLRWANHLRPNLKKGTFTAGEEQLICELHAKMGNKWARMASFLPGRTDNEIKNYWNTRIKRRNRAGLPLYPPEVLQKILHVQSTGGINGRNKVRPDFLQKKCFDKHDAIFDSLKDNQGILPYVPELPDISAYGNMLNGFDSSQYCSFVPSTSSNHKRFRESTIPFLDFSYIDRNDFYPFDRVQDDTFDKLTQSFGVQPPLDPGPSLHSSMCYSHSIMNDNSSTSKPFEAAKLELPSLQNSEIDLGSWVTSPPPPLLESIDDFIQSPAPVSTLESDCSSPQNSGLLQSVLYQWKTPSSSKNQYYDKSSNSSTATPGEREDSSALNMCETEWEDYADPVSPFGASSILNECPAVSANRNSLDEQPPVHTINGNNVKCEYVDQVWTPDSENQTTSLLNFSRPDFLLASGWYEPYSGHDKNQSMTGATSMFFEDQLATDYKHTTAGTSNPSQVWEFGSLAWNNMPAVYQISDLG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01604 548 Gene3D - 94 140 - -
Trre16g01604 548 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Trre16g01604 548 MobiDBLite consensus disorder prediction 375 396 - -
Trre16g01604 548 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Trre16g01604 548 Gene3D - 38 91 - -
Trre16g01604 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Trre16g01604 548 FunFam MYB-related transcription factor 38 91 - -
Trre16g01604 548 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Trre16g01604 548 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Trre16g01604 548 MobiDBLite consensus disorder prediction 375 400 - -
Trre16g01604 548 FunFam Transcription factor GAMYB 94 140 - -
Trre16g01604 548 SMART sant 91 139 IPR001005 -
Trre16g01604 548 SMART sant 38 88 IPR001005 -
Trre16g01604 548 CDD SANT 41 86 IPR001005 -
Trre16g01604 548 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Trre16g01604 548 CDD SANT 94 135 IPR001005 -
Trre16g01604 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 86 IPR017930 -
Trre16g01604 548 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01604 Trre-Chr16 12848974 12851974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01604 36 544 MYB Transcription Factor Family AT3G11440 41.729 4.43e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g01604 Myb_DNA-binding 6.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01604 K09422 - gmx:100810415 769.615