Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01595 ATGAGAGAGAATCTAGAGAGAGGAGAGAGTGGGAGTGCTAGGGCAACGACTGAGAAGAACAAGGGTTACTTTCATCATCTTGATAAGATAACCACCTCCTTCTTCTTTACGAATATCCCAGAGGACGCTACTTCGGAGGACCTGTGGAAGCTTTTCCTCAAATATGGAAGGGTGGGTGAGGTGTTCTTACCAAGGAAGCTTGACAAAAGGGGGAGGAGGTTTGGCTTTGTAAAATTCAAGGAGGTGTTGGAGGTGGATGTGCTCAGTGAAAAGCTCCGGGATGTTTGGATGGGTTCATTCAAATTATGGGTGAATCGATCAAGGTTTGGAAGATCTGAAAGGAAAGAAGACTCGAACAACATTAAGTCTACTCAACCTGCAGGGACAAAGCCAGAAGCTTTTGCTAATGGAAACTCATTTAGGAATGCTTTGGTGGGAGATGGAATACCGAGGATGCAGGCAGCTTTGAAGGTTCCTGTGAATGAATCTTTGAGCAAGGAACTTCAAGGTAGTATGGTAGGGTTGCTAGCTTGTGAAAAAGAGGTGCATCGTATCCAGACAACATTGTTCATGGAGGGCTTTCAATCGATTAAAGTTACAAACATGGGTGGTAATATGGCTCTCCTCAGAAGCCCAGTGGAAGGTGACGTGCAGAGGTTGTTAAGGAGCAACAATGAGTGCCTTACTTACTATTTTTCAAAGTTCAAACCATGGAACCCGGGTCTGATTGCTACACAAAGGGAGGTATGGATCCATGTGTATGGAATTCCAATATACATATGGGGGGATGATTTGTTTAAAATGATTGGGAATAAACTTGGAGTGTTCGTCGACTACGATGAGGAAACAGCTTCCATGGCTCGTTTTGATGTGGCAAGGGTGAAGATTTTAACTGCAACATGGGCCTCCATTGATGAAAATGTGAAAGTGGAGGTTGAAGGAGTATGTTTTGATCTATGGGTAGTGGAGGAAAAAGGGAGGCAGAGGTTTGGTGTCGTGTTGCATAGTGAGATGGAGGATGAAGGAAGTGTGGTGGCTCCCATGGCGGTGATGAAAGAGGTTGAAGATGATGATGTCGGAGAAGAAGAAAATTCCGGTGAAGATGAGGACTCCGGTGATGACATTGATGGCGACGTAAGGGAAAACATGCAGGGTGTGGGGATCAATGCAGACAACAACGACATCCCTTCAGCTGTGCAGGAGACCAAAGTAGGGGATATCTCTCTGATATGTGAAAAGTCAAAAGAAATCCCTAACTTAGATAAGGAAATTCCTTGTGTTGGGTTTAAGGAATCAATGACAGCAGCAGGAGAAAAGGTAGTAGATTTGGCGGTTTGTAGAAAAGGTGAGGATAGAGAAAAAGGAGTGGCAGGTGGGACCCAGTGTACGATACAGGTGGAGAATGTGGAATCAGCAAGTAGTGGACCACCACCAGGATTTGAATTGATTATTCAAAAGGGTGGGCTTGCGGATCAAAATTTGAATCCGATCCAAGTGGGCCTAATGGAAGTGGACCGGGTTGATACTTACCCAACTGATCAGGACCCGTTTGACGAAGGGGTGGTGCTGCGTTACTCATCAATTTCTGAACCAGAAGAAGCTCTATCTTCAAGCAGAGCTATTTTTCCAAAAAAGATGGGTAAAATCCGAAAATCTAAACCAGGTGCTAAACGGTCCAAACTCGGCGTTCCCAAGTGTATCCAATTTGCTGATTCAGTCAAAGAAATAGGGCCAAGGATCCGTAGAAGAAAGCAGAGAAATAGGGGCTTGCAGAACAACTCTGAGGTGGTAGGTAGCGATGGAGATACTTCATCTGTGGAGCGTGTAACTTTTCTGCAATCAAGAGGTGGTGAAGGGTGCAGTAGATGGCAAGGCAAGGATCCGGCGAAGACGAATCCTGGGGTAACTCCACCCTCGGGAATCAACCTCCTGTCTGAAAGTGAAAATTCAAGTAAGTCAACCCCTCCATTTCATAATCAGGCAGATGAGAGAGAGAAAGTAATTCAGGCTGCAAAACTCCTTAGTATACAAAAAGGAGTGGGATTCACTTTTGTAGACGATGATGATGTTACAATTAAGCAATTAGTAGAAAATGAGAAATGTGATAGAGTTAAGAAGATGGAAAGGGAGCAAAGGGAGTGTGATCAATGA 2151 0.4458 MRENLERGESGSARATTEKNKGYFHHLDKITTSFFFTNIPEDATSEDLWKLFLKYGRVGEVFLPRKLDKRGRRFGFVKFKEVLEVDVLSEKLRDVWMGSFKLWVNRSRFGRSERKEDSNNIKSTQPAGTKPEAFANGNSFRNALVGDGIPRMQAALKVPVNESLSKELQGSMVGLLACEKEVHRIQTTLFMEGFQSIKVTNMGGNMALLRSPVEGDVQRLLRSNNECLTYYFSKFKPWNPGLIATQREVWIHVYGIPIYIWGDDLFKMIGNKLGVFVDYDEETASMARFDVARVKILTATWASIDENVKVEVEGVCFDLWVVEEKGRQRFGVVLHSEMEDEGSVVAPMAVMKEVEDDDVGEEENSGEDEDSGDDIDGDVRENMQGVGINADNNDIPSAVQETKVGDISLICEKSKEIPNLDKEIPCVGFKESMTAAGEKVVDLAVCRKGEDREKGVAGGTQCTIQVENVESASSGPPPGFELIIQKGGLADQNLNPIQVGLMEVDRVDTYPTDQDPFDEGVVLRYSSISEPEEALSSSRAIFPKKMGKIRKSKPGAKRSKLGVPKCIQFADSVKEIGPRIRRRKQRNRGLQNNSEVVGSDGDTSSVERVTFLQSRGGEGCSRWQGKDPAKTNPGVTPPSGINLLSESENSSKSTPPFHNQADEREKVIQAAKLLSIQKGVGFTFVDDDDVTIKQLVENEKCDRVKKMEREQRECDQ 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01595 716 MobiDBLite consensus disorder prediction 114 133 - -
Trre16g01595 716 MobiDBLite consensus disorder prediction 355 376 - -
Trre16g01595 716 Gene3D - 31 110 IPR012677 -
Trre16g01595 716 MobiDBLite consensus disorder prediction 355 381 - -
Trre16g01595 716 Pfam Domain of unknown function (DUF4283) 193 296 IPR025558 -
Trre16g01595 716 CDD RRM_SF 35 86 - -
Trre16g01595 716 SMART rrm1_1 33 105 IPR000504 GO:0003723
Trre16g01595 716 PANTHER DUF4283 DOMAIN PROTEIN 112 366 - -
Trre16g01595 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 82 IPR000504 GO:0003723
Trre16g01595 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Trre16g01595 716 MobiDBLite consensus disorder prediction 590 611 - -
Trre16g01595 716 MobiDBLite consensus disorder prediction 635 657 - -
Trre16g01595 716 MobiDBLite consensus disorder prediction 580 662 - -
Trre16g01595 716 SUPERFAMILY RNA-binding domain, RBD 33 271 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01595 Trre-Chr16 12766698 12768848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01595 32 117 Eukaryotic Initiation Factors Gene Family AT1G71770 30.233 8.96e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01595 - - tpra:123892180 170.244