Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01587 ATGACATGTACTACAAGGTTTCTAAGCTTCATTATACTTCATATATTCCTCTTAACCTTAACAAATGCACAGTCACCATTTTACGTGATAAGTTTTTGCCAGAATTCAACTGAAAAAACAGACATCACATCATACCGATCCAACGTTAACAACGTCCTTTTATGGATAAACTCTAATTCTGCCGCAGGGACAGTATCTAACCAGACCGTGGTACACAGCAGCAACAAAGATGATGATGTTTATGGGTACTATGATTGTCGTGGTGACATCACAGGAAGTTTCTGTCAATTTTGTCTCACCACTGCTGTCAAAGATATCAGGCAACGTTGTCCCAATGGGGTCACGGCCATGATATGGTATGATATATGCATCGTCGGATATTCTAACCAATATTTCCCAGGAAAAGTTACTTTAACCCCATCATGGAATTTCACCGGATCGAAAAACGTCACGGACTCAACTGATCTTGGGAAAGCAGTAAATTACATGAGGAATTTGATAGGCAAAGTGACTAAAGGTGGCAATCAGCATTGGGCAATGGGTGAGTTCAATTGGAGTGACAATGCGAAAAGTTATGCTTGGGTGCAGTGTAGTAGAGATATTAGTAAGGATGGGTGCAAACAGTGTTTGGAGACTATGTTGGATAAAGTTCCTAAGTGTTGTGGAACAAAGGTAAAATGGGCAGTGATGTGTCCTAGTTGTGGGATGGAGATTGACAATAATAAGTTCTATCAACTGCCAACAGGATCCTCTTCTCCATTGCCAAATCGAGGCAAGCAAGGGGCAAGTAATACCAAAACCTTGATCATCATCTTAGTAAGTGTACTGGTGGCAGTAGCTCTACTAAGTTATTGTGTCTACTACTACTGGAGAAATAATCGGTTAAGTAAAGGTCGATCGCTGTTGAGGACCATTACACCTATATCTTTCCGTGATAAGGTTCAAAGAGAGGATTCATTAAATGGAGACCTTCCTACAATCCCTTTAACTGTAATTCAACAGAGCACCGATAACTTTTCAGAATTATATAAACTCGGAGAAGGTGGATTTGGCCCAGTTTACAAGGGTACTTTACCAGATGGCACAGAAGTTGCTGCCAAAAGGCTTTCAGAAACATCAGGTCAAGTATATGAGTACATGCCAAATTCAAGCCTCGACTTCCACCTTTTCAATAAGGAAAAACAAAAGCATCTAGGTTGGAAATTACGACTAAGCATTATCAATGGAATTGCAAAAGGACTGCTTTACCTTCATGAGGATTCTCGACTTAGAGTAATCCATAGAGATCTGAAAGCCAGCAATGTTCTTCTGGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAACATTTGAAAAAGACCAATGTCCGACAAAAACAAAACGAGTTATTGGCACCTATGGATACATGGCTCCAGAATACGCAATGGCTGGGTTATTTTCAGTGAAATCCGATGTTTTCAGCTTTGGAGTTCTTTTATTAGAGATAATTTATGGTAAAAGAAATGGCGAATTCGTTCTTTCAGAACATATGCAAAGTCTTCTATTATATACTTGGAAACTCTGGTGTGACGGAAAAAGTTTAGAATTAATCGATCCTTTCCTCAAAAAATCATACGTTGAAAGTGAAGTCTTGAAGTGCATACACATTGGTTTATTGTGCGTTCAAGAAGATGCAGCTGATCGACCAACCATGTCCACCGTTGTTCGCATGCTAGGGAGTAACACAGTAGACTTTCCAAAACCGACGCAACCAGCATTTTCAATTGGTAGAAAGTCCAAGAATGAAGATCAAACTTCAAAAAATTCTAAGGATAATTCTGTTGATGAAGAAACCCTAACTATTGTTTCACCTAGATAG 1869 0.3917 MTCTTRFLSFIILHIFLLTLTNAQSPFYVISFCQNSTEKTDITSYRSNVNNVLLWINSNSAAGTVSNQTVVHSSNKDDDVYGYYDCRGDITGSFCQFCLTTAVKDIRQRCPNGVTAMIWYDICIVGYSNQYFPGKVTLTPSWNFTGSKNVTDSTDLGKAVNYMRNLIGKVTKGGNQHWAMGEFNWSDNAKSYAWVQCSRDISKDGCKQCLETMLDKVPKCCGTKVKWAVMCPSCGMEIDNNKFYQLPTGSSSPLPNRGKQGASNTKTLIIILVSVLVAVALLSYCVYYYWRNNRLSKGRSLLRTITPISFRDKVQREDSLNGDLPTIPLTVIQQSTDNFSELYKLGEGGFGPVYKGTLPDGTEVAAKRLSETSGQVYEYMPNSSLDFHLFNKEKQKHLGWKLRLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARTFEKDQCPTKTKRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIIYGKRNGEFVLSEHMQSLLLYTWKLWCDGKSLELIDPFLKKSYVESEVLKCIHIGLLCVQEDAADRPTMSTVVRMLGSNTVDFPKPTQPAFSIGRKSKNEDQTSKNSKDNSVDEETLTIVSPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01587 622 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Trre16g01587 622 FunFam Liguleless narrow1 380 583 - -
Trre16g01587 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Trre16g01587 622 Pfam Protein tyrosine and serine/threonine kinase 376 575 IPR001245 GO:0004672|GO:0006468
Trre16g01587 622 Gene3D Phosphorylase Kinase; domain 1 305 384 - -
Trre16g01587 622 Gene3D - 27 132 IPR038408 -
Trre16g01587 622 Gene3D - 141 243 IPR038408 -
Trre16g01587 622 MobiDBLite consensus disorder prediction 597 611 - -
Trre16g01587 622 Gene3D Transferase(Phosphotransferase) domain 1 385 584 - -
Trre16g01587 622 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 375 - -
Trre16g01587 622 SUPERFAMILY Protein kinase-like (PK-like) 323 592 IPR011009 -
Trre16g01587 622 ProSiteProfiles Protein kinase domain profile. 254 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01587 622 MobiDBLite consensus disorder prediction 583 622 - -
Trre16g01587 622 Pfam Salt stress response/antifungal 183 239 IPR002902 -
Trre16g01587 622 Pfam Salt stress response/antifungal 33 130 IPR002902 -
Trre16g01587 622 ProSiteProfiles Gnk2-homologous domain profile. 138 243 IPR002902 -
Trre16g01587 622 SMART serkin_6 339 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01587 Trre-Chr16 12688352 12691752 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01587 2 622 Receptor kinase-like Gene Family AT4G05200 35.912 6.88e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01587 PK_Tyr_Ser-Thr 7.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01587 - - mtr:11406796 988.408