Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01583 ATGGTCGAGAAGATGACTACTCGTAACTCGTATTGGGATCTTGTTTGGAGTGCACCAAGAATCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACAAGGATGGCCAGATTTTGATATGAGTGAAACAAGGATCACTTTCAAGCTCAGAAAAGATAAGTAA 324 0.3765 MVEKMTTRNSYWDLVWSAPRIKGYFDVINGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLQGWPDFDMSETRITFKLRKDK 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01583 107 Pfam Rhamnogalacturonate lyase family 6 107 IPR010325 -
Trre16g01583 107 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01583 Trre-Chr16 12659774 12661436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01583 2 107 Polysaccharide Lyase AT1G09910 66.981 6.07e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01583 K18195 - gmx:100814185 191.43