Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01582 ATGACTACTCGTAACTCGTATTGGGATCTTGTTTGGAGTGCACCAAGAATCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTTTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACAAGGATGGCCAGATTTTGATATGAGTGAAACAAGGATCACTTTCAAGCTCAGAAAAGATAATGCTTTCATGGTTCATCAATTTGCTTGTGGTAATAGAAAGAAGCCTAATTGGATTTTTCCCAAAACAAGGGTACAGCCCAACAGCAATGATTGTGGATATTATGTAATGAAGAATATGATTGACATTGCCTCTGCTAGTGTTACAAAGAAATGGGATGAGGTGTTCAATGATCCTACGACATTATCAGAAGATGACTTGTATGAGTTGCGAAATCATTGGGCAACTTGTTTTCTTGACCTATATAACCCGGAGAATGATTATGACGATGGTGCTAAGGGAAGATGTTAG 597 0.3769 MTTRNSYWDLVWSAPRIKGYFDVINGTCFEVIVQNEDQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLQGWPDFDMSETRITFKLRKDNAFMVHQFACGNRKKPNWIFPKTRVQPNSNDCGYYVMKNMIDIASASVTKKWDEVFNDPTTLSEDDLYELRNHWATCFLDLYNPENDYDDGAKGRC 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01582 198 Gene3D Adenoviral Proteinase; Chain A 71 183 - -
Trre16g01582 198 Pfam Rhamnogalacturonate lyase family 6 135 IPR010325 -
Trre16g01582 198 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 105 - -
Trre16g01582 198 SUPERFAMILY Cysteine proteinases 38 183 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01582 Trre-Chr16 12658807 12661424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01582 3 123 Polysaccharide Lyase AT1G09910 61.157 1.04e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01582 K18195 - gmx:100814185 192.586