LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g01580	ATGAGCATTATGAACTTTCATCTTAGCATCATCCTTCTTCTTCTTCTCTTCCTCTTCACACCAACAAATTCACAATCTCCAATTTCACTGATAAAATTCTGCAACAACTCAACTACAAAACCTCTCACAACTTCATACAAATCCAACATAAACAAAGTCCTAACATGGATGACTACTATTTCTTTAACAGACCAATCTAACCAAACCTCCATAGGTAGCAATAATGATACAGTTTATGGAAACTATGATTGTCGCGGCGACGTAGCTTCAAATGTTTGTCAGTTTTGTGTTAGCATTGCAGTTAAAGAAATTTTACAAACTTGTACAAATACAAATGGTATCTCAGCTATTATATTCTATGATATGTGCATACTACGTTACTCTAACATGAATTACTTTGGAGAAATTCACTTAACTCCGGCATTTAATATAACTGGTAATAAGTTCATAAAGGATTCATCTGAGCTTGTGAAAGCTCAGGATTTGTTAAGGAATTTGGCAAGGAAGTCGACAGATGCTAATCGAATGTGGGCGACAAGCGAGTTTGATTGGAGTAAAAGTGAGAAAAGATATGGTTTGGTTCAGTGTGCTGGAGATCTTAATATTTCTGTGTGTAAAGAGTGTTTGGAGGAATTGATAAATAGGGTTGGTATGTGTTGTGGGAGAAAAGTTATGTGGGCTATTGTTGCTCCAAGTTGTGGAATTAGATTTGATGATAAGAATTTTTACCAAACATGGTCTTCTTCTTCGCCAAATCAAGGTATGCAGGAAGGTTCAAGTCACAAAAAAACCTTAACAGTCAGCTTAGTAAGTGTACTAATTGTAGTAGTTTTACTAACTTGTGGTGTCTACTACTCATGGAGAAGGAATAATAGATTAAGTCGAGGCGGATTGATGTCGAGGAACATTCCTACAGCTTTTCGACGTGATGATGTTCAAAGAGATGATTTATTAAATGGAGACCTTCCGATTATACCTTTATTTGTTATTCAACAAAGCACTGATTACTTTTCATTGTCTTCTAAATTAGGAGAAGGGGGATTTGGTTCTGTTTACAAGGGTACTTTACCGGATGGGACAGAAATTGCGGCCAAAAGGCTTTCAGAAACGTCCGGTCAAGGTTTAGAAGAGTTCAAGAATGAAGTGATTTTCATAGCGAAACTACAACATAGAAACCTTGTGAAACTCTTGGGTTGTTGCTTTGAAGAAAATGAAAAGATACTAGTGTATGAGTACATGCCAAATTCGGGCCTCGACTTTCACCTTTTCAATTTGGAAAATCATAATCAACTAGATTGGAATAAACGTCTAAACATTATAAACGGAATCGCAAGAGGACTGTTATACCTTCATGAGGATTCTCGACTTAGAGTTATTCATAGAGATTTGAAAGCTAGCAATGTTCTTTTGGACGATGAAATGAATCCAAAGATATCAGATTTCGGATTGGCTAGAAGGTTCGAAAAAGGCCAAAGTCAGACAGAAACAAAAAGAGTTATGGGCACCTACGGTTACATGGCTCCAGAATATGCTATGGCTGGATTGTTTTCGGTAAAATCTGATGTTTTCAGCTTTGGAGTGCTCGTATTGGAAATCGTTTATGGAAAAAGGAATGGTGAAGTCTTCTTTTCGGAACATGGCCAAAGTCTTCTCTTATATATTTGGAAACTCTGGTGTGAAGGAAAAAGTTGGGAATTTGTCGAGCCGATCCAAAGAAAAACATACATCCAAAGCGAAGTTCTAAAGTGCGTACACATTGGTTTATTGTGCGTGCAAGAAGATGCTGCAGATCGACCAACTATGTCCACCGTTGTTCTCATGCTAGGGAGCGACACAATGGTCCTTCCAAAACCCGAAAGACCAGCATTTTCTGTTGGAAGATTGGCAAATGAAGATTCAACTTCAAAAAGTTATAATGATAACTCGATTAATGAACTTACGGTAACTAGTTTTACACCTAGATAA	1965	0.372	MSIMNFHLSIILLLLLFLFTPTNSQSPISLIKFCNNSTTKPLTTSYKSNINKVLTWMTTISLTDQSNQTSIGSNNDTVYGNYDCRGDVASNVCQFCVSIAVKEILQTCTNTNGISAIIFYDMCILRYSNMNYFGEIHLTPAFNITGNKFIKDSSELVKAQDLLRNLARKSTDANRMWATSEFDWSKSEKRYGLVQCAGDLNISVCKECLEELINRVGMCCGRKVMWAIVAPSCGIRFDDKNFYQTWSSSSPNQGMQEGSSHKKTLTVSLVSVLIVVVLLTCGVYYSWRRNNRLSRGGLMSRNIPTAFRRDDVQRDDLLNGDLPIIPLFVIQQSTDYFSLSSKLGEGGFGSVYKGTLPDGTEIAAKRLSETSGQGLEEFKNEVIFIAKLQHRNLVKLLGCCFEENEKILVYEYMPNSGLDFHLFNLENHNQLDWNKRLNIINGIARGLLYLHEDSRLRVIHRDLKASNVLLDDEMNPKISDFGLARRFEKGQSQTETKRVMGTYGYMAPEYAMAGLFSVKSDVFSFGVLVLEIVYGKRNGEVFFSEHGQSLLLYIWKLWCEGKSWEFVEPIQRKTYIQSEVLKCVHIGLLCVQEDAADRPTMSTVVLMLGSDTMVLPKPERPAFSVGRLANEDSTSKSYNDNSINELTVTSFTPR	654

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g01580	654	ProSitePatterns	Protein kinases ATP-binding region signature.	343	365	IPR017441	GO:0005524
	Trre16g01580	654	Pfam	Domain of unknown function (DUF3403)	610	654	IPR021820	GO:0004674
	Trre16g01580	654	Pfam	Salt stress response/antifungal	34	129	IPR002902	-
	Trre16g01580	654	Pfam	Salt stress response/antifungal	158	239	IPR002902	-
	Trre16g01580	654	ProSiteProfiles	Gnk2-homologous domain profile.	137	242	IPR002902	-
	Trre16g01580	654	ProSiteProfiles	Gnk2-homologous domain profile.	28	132	IPR002902	-
	Trre16g01580	654	Gene3D	-	143	242	IPR038408	-
	Trre16g01580	654	Gene3D	-	28	132	IPR038408	-
	Trre16g01580	654	SUPERFAMILY	Protein kinase-like (PK-like)	320	608	IPR011009	-
	Trre16g01580	654	Gene3D	Phosphorylase Kinase; domain 1	300	412	-	-
	Trre16g01580	654	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	39	649	-	-
	Trre16g01580	654	Pfam	Protein tyrosine and serine/threonine kinase	338	606	IPR001245	GO:0004672\|GO:0006468
	Trre16g01580	654	ProSiteProfiles	Protein kinase domain profile.	337	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01580	654	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	458	470	IPR008271	GO:0004672\|GO:0006468
	Trre16g01580	654	CDD	STKc_IRAK	343	608	-	-
	Trre16g01580	654	SMART	serkin_6	337	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01580	654	FunFam	cysteine-rich receptor-like protein kinase 10	413	615	-	-
	Trre16g01580	654	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	305	412	-	-
	Trre16g01580	654	Gene3D	Transferase(Phosphotransferase) domain 1	413	614	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g01580	Trre-Chr16	12577709	12580684	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g01580	14	654	Receptor kinase-like Gene Family	AT4G05200	40.822	1.23e-169	499

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre16g01580		PK_Tyr_Ser-Thr	3.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g01580	-		-	tpra:123894542	929.858