LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g01579	ATGACAAATATGAAATTTCTTAGCTTCATGCTCCTCCTTCTTTTCCTTGTCTTCCACTTCACACCAACAAGTGCACAAGTTCCAATTTACTTGTACAATTTTTGTGAAAACTCAACAGCAAAATCTCTAAGCACTTCATACAAATCAAACGTAAACGACTTTGTTTCATGGATATCTTCTGATTCTTCCAAAGGAACAAAATTTAACCACACCATCATAGGAAGCAGCAGCAGTGACACTGGTGATGATGTTTATGGAAACTACGATTGCCGGTTTGATATTCCAGAAAGTTTATGTCAATTCTGTGTCAAAACTGCTGCAAGAGATCTTGTTCAACATTGTCCAAACAGCGTAACGTCTGTTATATTTTATGATGTATGTATTATCCGTTACTCTAACGAGAATTTCTTTGGAAAAGTTTCGATAACACCAACATGGAATGCTACTGGAACAAAAAATATTAAGGACTCGAGTGATCTTGCAAAAGTAGAGGGTTACATAAGGGTTTTGATACAAAAAGCGACTATAGAGACTAACCTATCATGGGCAATGGATGAGTTTAATTTGAGTAATACGGAGAAAAGGTACGGTTTAGCTCAGTGTGGTAGAGACATCGATACTGAAGGGTGCAGACAGTGTTTGGAGGCTCTGTTGGACTTAGTTCCCAAGTGTTGTGGGAATAAGGTGTCATGGGAAGTTGTGGCTCCAAGTTGTGGGCTCAGATTTGATAATCAAAAGATCAGTTTGTCAAATGGGCAAACAGTATCATCTTCTAAACAAAATCCAGCCAATCAAGAAGATTCAAGTAACAAAAAAACGTTGGTCATCGCCTTAGTAAGTGCGCTCGTGGCAGTAGCCCTTCTATGTTGCAGTATCTACTACTACTGGAGAAAGAACGGGTTGAGTAAAGGTGGATTTCTGTCGAGGAACACTAAAACTATAGCTTATAATGATAATATCGAAAGAGATGATACATTGAATGGAGACCTTCCTATGATCCCTTTTACTGTAATTCAACAAAGCACAGATAACTTTTCAATATCATCTAAGTTAGGAGAAGGTGGATTTGGACCTGTTTACAAGGGTACTTTACCTGATGGGACAGAAATTGCAGTCAAAAGACTTGCAGATACGTCTAATCAAGGTTCCGAGGAGTTCAAGAATGAAGTGATCTTCATAGCTAAACTGCAACATAGGAATCTTGTGAAACTATTAGGTTGCTGCATTGAAGACGACGAAAAGATACTAGTATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAATGAAGAAAAAAGTAAGCAACTAGATTGGACATTACGACTAAGTATTATCAATGGAATCGCAAGAGGATTGTTATACCTTCACCAAGATTCTCGACTTAGAGTTATCCATAGAGATATGAAAGCCAGCAATGTTCTTCTTGATGACGAAATGATTCCAAAAATATCAGATTTTGGATTGGCAAGGACATTCGAAAAAGGCCAAAATCAGACAAAAACAAGAAGAGTAATTGGAACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGATTATTTTCAGTAAAATCTGATGTATTCAGCTTTGGAGTTCTTTTATTAGAAATCGTTTATGGAAAAAGGAATGGTGAAGTCATTTCCGAACATAGGCAAGGTCTTCTATTACATACTTGGAAACTTTGGTGTGAAGGGAAAAGTTTAGAATCAATTGATCCGATCCACAAAGAATCATACATTGAAAGTGAGGTTATGAAGTGCATACACATTGGTTTATTGTGTGTACAGCAAGATGCTGCAGATCGACCAACCATGTCCACCGTTGTTCTCATGCTAGGCAGTGACACAATGCCCCTTCCGAAACCCAAGCAACCAGCATTTTCAGTCGGAAGAATGTCCGAAGAAGATCCAAGTTCAAATAGTTATAAGGATAAGTCTGTTGATGAAGTACCTATAACTATTGTTTCAGCTAGATAG	1986	0.3797	MTNMKFLSFMLLLLFLVFHFTPTSAQVPIYLYNFCENSTAKSLSTSYKSNVNDFVSWISSDSSKGTKFNHTIIGSSSSDTGDDVYGNYDCRFDIPESLCQFCVKTAARDLVQHCPNSVTSVIFYDVCIIRYSNENFFGKVSITPTWNATGTKNIKDSSDLAKVEGYIRVLIQKATIETNLSWAMDEFNLSNTEKRYGLAQCGRDIDTEGCRQCLEALLDLVPKCCGNKVSWEVVAPSCGLRFDNQKISLSNGQTVSSSKQNPANQEDSSNKKTLVIALVSALVAVALLCCSIYYYWRKNGLSKGGFLSRNTKTIAYNDNIERDDTLNGDLPMIPFTVIQQSTDNFSISSKLGEGGFGPVYKGTLPDGTEIAVKRLADTSNQGSEEFKNEVIFIAKLQHRNLVKLLGCCIEDDEKILVYEYMPNSSLDFHLFNEEKSKQLDWTLRLSIINGIARGLLYLHQDSRLRVIHRDMKASNVLLDDEMIPKISDFGLARTFEKGQNQTKTRRVIGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIVYGKRNGEVISEHRQGLLLHTWKLWCEGKSLESIDPIHKESYIESEVMKCIHIGLLCVQQDAADRPTMSTVVLMLGSDTMPLPKPKQPAFSVGRMSEEDPSSNSYKDKSVDEVPITIVSAR	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g01579	661	Pfam	Salt stress response/antifungal	190	245	IPR002902	-
	Trre16g01579	661	Pfam	Salt stress response/antifungal	35	133	IPR002902	-
	Trre16g01579	661	Gene3D	-	144	246	IPR038408	-
	Trre16g01579	661	Gene3D	-	28	136	IPR038408	-
	Trre16g01579	661	ProSiteProfiles	Protein kinase domain profile.	345	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01579	661	MobiDBLite	consensus disorder prediction	623	649	-	-
	Trre16g01579	661	Gene3D	Phosphorylase Kinase; domain 1	307	420	-	-
	Trre16g01579	661	ProSiteProfiles	Gnk2-homologous domain profile.	142	247	IPR002902	-
	Trre16g01579	661	Pfam	Domain of unknown function (DUF3403)	617	661	IPR021820	GO:0004674
	Trre16g01579	661	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	47	657	-	-
	Trre16g01579	661	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	421	623	-	-
	Trre16g01579	661	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	307	420	-	-
	Trre16g01579	661	ProSiteProfiles	Gnk2-homologous domain profile.	29	136	IPR002902	-
	Trre16g01579	661	SMART	serkin_6	345	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01579	661	Gene3D	Transferase(Phosphotransferase) domain 1	421	621	-	-
	Trre16g01579	661	Pfam	Protein tyrosine and serine/threonine kinase	347	613	IPR001245	GO:0004672\|GO:0006468
	Trre16g01579	661	SUPERFAMILY	Protein kinase-like (PK-like)	330	643	IPR011009	-
	Trre16g01579	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Trre16g01579	661	CDD	STKc_IRAK	351	615	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g01579	Trre-Chr16	12571644	12574576	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g01579	6	661	Receptor kinase-like Gene Family	AT4G05200	40.205	6.67e-170	500

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre16g01579		PK_Tyr_Ser-Thr	1.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g01579	-		-	mtr:11406796	881.322