Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01578 ATGACATATATGAAATTTCTTAGCTTCATGCTCCTTCTTCTTTTCCTTGTCTTCCACTTCACACCAACAAGTGCACAAGTTCCAATTTACTTATACAATTTTTGTGAAAACTCAACAGCAAAATCTCTAAGCACTTCATTCAAATCGAACGTAAACAACTTTGTTTCATGGATAGCTTCTGATTCTTCCAAAGGAACAACATTTAACCGCACCATCATAGGCAGCAGCAGCAGTGACACTGGTGATGATGTTTATGGAAACTACGATTGCCGGTTTGATATTTCGGAAAGTTTCTGTCAATTCTGTGTTAACACTGCTGCAAGAGATCTTGTTCAACATTGTCCAAACAGCGTCATGTCTGTTATATTTTATGATGTATGTATTATCCGTTACTCTAACGAGAATTTCTTTGGAAAAGTTTCGACAACACCAACATGGAATGTTACTGGAACCAAAAAAATTAAGGAGTCAACTGATCTTGCAAAAGTAGAGGGTTATATAAGAGTTTTGATACGAAAAGCGACTATAGAGACTAATCAATCATGGGCAATGGGTGAGTTTAATTTGAGTAATACGGAGAAAAGATATGGTTTAGCTCAGTGTGGTAGAGACGTCAATAATGAAGGGTGTAGACAGTGTTTGGAGGCTATGTTGGACTTTGTTCCCAAGTGTTGTGGGAATAAGGTGTCATGGGAAGTTGTTGCTCCAAGTTGTGGGATCAAATTTGATGATCAAAAGTTCTTTATGTTAAATGCGCAAACAGGATCATCTTCTAAACCAAATACAGGCAATCAAGAAGATTCAAGTAACAAAAAAACGTTGGTCATCACCTTAGTAAGTGCGCTCGTGGCAGTAGCCCTTCTATGTTGCTGTATCTACTACTACTGGAGAAAGAACGGGTTGAGTAAAGGTGAATCTCCGTCGAGGAGCACTACTACTATAGCTTATAATGATAATGTTCAAAGAGAGGATACATTGAACGGAGACCTTCCTATGATCCCGTTTACTATAATTCAACAAGCCACTAATTACTTTTCACTATCATCTAAGTTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGCACTTTACCTGATGGGACAGAAATTGCAGTCAAAAGGCTTTCACATACGTCTGATCAAGGCTCCGAGGAGTTCAAGAATGAAGTAATCTTCATAGCTAAACTGCAACATAGGAATCTTGTGAAACTAATAGGTTGCTGCATTGAAGACGGCGAAAAGATACTAGTATATGAGTACATGCCAAATTCAAGCCTTGACTTTCACCTTTTCAATGAAGAAAAAAGTAAGCAACTAGATTGGACATTACGACTAAGTATTATCAATGGAATTGCAAGAGGATTGTTATACCTTCACCAAGATTCTCGACTTAGGGTTATCCATAGAGATATGAAAGCCAGCAATGTCCTTCTTGATGATGAAATGATTCCAAAAATATCAGATTTTGGATTGGCAAGGACATTCGAAAAAGGCCAAAGTCAGACAAAAACAAGAAGAGTTATGGGCACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGATTATTTTCAGTAAAATCTGATGTATTCAGCTTTGGAGTTCTTTTATTAGAAATCGTTTATGGAAAAAGGAACGGTGAAGTCTTTATTTCAGAACATAAGCAAGGTCTTCTATTATATACTTGGAAACTTTGGTGTGAAGGGAAAAGTTTGGAATCAATTGATCCGATCCACAAAGAATCATACATTGAAAGTGAGGTTTTGAAGTGCATACACATTGGTTTATTGTGTGTACAACAAGATGCTGCAGATCGACCAACCATGTCCACCCTTGTTTTGATGTTAGGCAGTGACACAATGCCTCTTCCGAAACCCAAGCGACCGGCATTTTCAGTTGGAAGAATGTACGCAGAAGAAGATCCAAGTTCAAATAGTTCTAAGGATAATTATTATGTTGATGAAGTACCTATAACTATTGTTTCAGCTAGATAG 1995 0.3784 MTYMKFLSFMLLLLFLVFHFTPTSAQVPIYLYNFCENSTAKSLSTSFKSNVNNFVSWIASDSSKGTTFNRTIIGSSSSDTGDDVYGNYDCRFDISESFCQFCVNTAARDLVQHCPNSVMSVIFYDVCIIRYSNENFFGKVSTTPTWNVTGTKKIKESTDLAKVEGYIRVLIRKATIETNQSWAMGEFNLSNTEKRYGLAQCGRDVNNEGCRQCLEAMLDFVPKCCGNKVSWEVVAPSCGIKFDDQKFFMLNAQTGSSSKPNTGNQEDSSNKKTLVITLVSALVAVALLCCCIYYYWRKNGLSKGESPSRSTTTIAYNDNVQREDTLNGDLPMIPFTIIQQATNYFSLSSKLGEGGFGPVYKGTLPDGTEIAVKRLSHTSDQGSEEFKNEVIFIAKLQHRNLVKLIGCCIEDGEKILVYEYMPNSSLDFHLFNEEKSKQLDWTLRLSIINGIARGLLYLHQDSRLRVIHRDMKASNVLLDDEMIPKISDFGLARTFEKGQSQTKTRRVMGTYGYMAPEYAMAGLFSVKSDVFSFGVLLLEIVYGKRNGEVFISEHKQGLLLYTWKLWCEGKSLESIDPIHKESYIESEVLKCIHIGLLCVQQDAADRPTMSTLVLMLGSDTMPLPKPKRPAFSVGRMYAEEDPSSNSSKDNYYVDEVPITIVSAR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01578 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 89 662 - -
Trre16g01578 664 Pfam Salt stress response/antifungal 35 133 IPR002902 -
Trre16g01578 664 Pfam Salt stress response/antifungal 187 244 IPR002902 -
Trre16g01578 664 ProSiteProfiles Gnk2-homologous domain profile. 142 247 IPR002902 -
Trre16g01578 664 SMART serkin_6 345 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01578 664 Pfam Domain of unknown function (DUF3403) 618 664 IPR021820 GO:0004674
Trre16g01578 664 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 309 420 - -
Trre16g01578 664 CDD STKc_IRAK 351 616 - -
Trre16g01578 664 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 421 624 - -
Trre16g01578 664 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
Trre16g01578 664 Gene3D - 28 136 IPR038408 -
Trre16g01578 664 Gene3D - 146 247 IPR038408 -
Trre16g01578 664 ProSiteProfiles Gnk2-homologous domain profile. 29 136 IPR002902 -
Trre16g01578 664 Gene3D Phosphorylase Kinase; domain 1 307 420 - -
Trre16g01578 664 Pfam Protein tyrosine and serine/threonine kinase 346 614 IPR001245 GO:0004672|GO:0006468
Trre16g01578 664 ProSiteProfiles Protein kinase domain profile. 345 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01578 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Trre16g01578 664 SUPERFAMILY Protein kinase-like (PK-like) 327 616 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01578 Trre-Chr16 12565330 12568734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01578 6 664 Receptor kinase-like Gene Family AT4G05200 39.562 1.16e-170 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01578 PK_Tyr_Ser-Thr 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01578 - - mtr:11406796 882.863