Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01577 ATGGAAAGAACACAACTAAATTTGACATCAATATTTTTTGCTTTGCAACTATATCTAAGCTTCAAACAAATCATTACAAAAGCTCAATCACCAAGATATGTGGGAGATGACTGTAATTACTCAAAACAACAGCCTCTTAGCAATGCATACCAAAACAATCTCAATAGCATCCTCTCATATCTATCCGATGATTCAGCCACAAGCAAAGGTTATAACTACACCAGAATAGGGGACAACACAACCAAAGGTGATGCTGTGTATGGTCTCTATGATTGCCGTGGTGATGTGGTTGGATACTTTTGTGAATTTTGTGTCTCTTCTGCTGCCAGAGAAGTTCTTGGTCGCTGTCCGAATAGAGTCGCTGCTACTATATTTTATAGCTTCTGCATTTTTAGGTACTCAAATGAGAACTTCTTTGGGAAAGTCACAACAGACCCTTCATGGAAACATTTAGGAACCAAAAACGTCTCTAGTGCGATAGAGATTCAGAAAGGCGATGATTTTATGAAAGGTTTGATAAGAAAAGCAACTATTGAGACCAACCAATTGTACTATATGGATGGTTTCAATTTGAGTTCTACGGAGAGTAGATACGGACTGGTTCAATGCAGTAGAGATCTTACAAATGAAAGGTGCAGACAGTGTTTGGAGTTTATGTTAGCAAAGGTTCGCACATGTTGCGAACATAAGTTGGGATGGCAGGTTTCATCTGCTAGTTGTCTGATCAGGTATGATGATTATAAGTTCTATCTTCTCCAAGATCAATCACCTTCGGTAGTTGTGCCTGATCCACAAGCAGCAAACAAGAGTACTAGTAAGTCAAGAAAGTTGATCATTGGCTTTAGTGTTCTGGGTGTAGTAATTCTACTATGTTCAACTATATATTGCTTCTGGTACAAGAAAAGAGTTAGAAAAGATTGGCTGACACCTGCATACGAGGAAACACTTAATGCGGACCTGCCTACAATTCCATTGATCACAATTCAACATTGTACTGATAACTTTTCAGAAACATCTAAATTAGGGGAAGGTGGATTTGGATCTGTTTACAAGGGGATTCTTCCAGATGGAAGACAAATAGCAGTAAAAAGGCTGTCAAGAAATTCAGGTCAAGGCTCGGAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAATCTTGTAAGACTTTTGGCGTGCTGCTTGGAAGGAAATGAAAAGCTACTTGTGTATGAGTTTATGCCGAATGCAAGTCTCGACTTTCACCTGTTTGATGATGAAAAAAGAAAGGAACTTAATTGGAAACTAAGTTTAAGCATTATCAATGGAATAGCAAAAGGTCTTTTATACCTCCATGAGGACTCTAGACTAAGGGTGATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGAATGGCAAGGGCATTTGAAATAGGTCAGAACCAGGCGAATACAAGACGAATAATGGGCACCTATGGATACATGGCACCGGAGTACGCAATGGAAGGAGTATTTTCAGTGAAATCTGATGTATTCAGCTTTGGAGTACTAGTTTTAGAAATCATTAGTGGGAAAAAGAATACCGGATTCTATTTGTCAGAACATGGTCGAAGTCTTCTTTTATATACATGGAAAAAATGGTGTGAAGGAAACTGTTTGGATATTATGCATTCGGTACTTGGAAAAACCTGTATAGACAATGAAGTTGTGAGGTGCATAAACATTGGCCTATTGTGTGTTCAAGAAGACGCGGCAGATAGACCAACCATGTCAACTGTTGTTGTAATGTTGGCGAGTGACACAACGGCCCTTCCAAAACCGAAACAACCTGCATTTTCAATTGGAAGAATGACCTGTGATGATAACTCTACCTCAAAAAGTTCCAAGACTCCTTCCATTAATGATGTAACAGTCTCAAACATTGTACCGAGGTAA 1962 0.3858 MERTQLNLTSIFFALQLYLSFKQIITKAQSPRYVGDDCNYSKQQPLSNAYQNNLNSILSYLSDDSATSKGYNYTRIGDNTTKGDAVYGLYDCRGDVVGYFCEFCVSSAAREVLGRCPNRVAATIFYSFCIFRYSNENFFGKVTTDPSWKHLGTKNVSSAIEIQKGDDFMKGLIRKATIETNQLYYMDGFNLSSTESRYGLVQCSRDLTNERCRQCLEFMLAKVRTCCEHKLGWQVSSASCLIRYDDYKFYLLQDQSPSVVVPDPQAANKSTSKSRKLIIGFSVLGVVILLCSTIYCFWYKKRVRKDWLTPAYEETLNADLPTIPLITIQHCTDNFSETSKLGEGGFGSVYKGILPDGRQIAVKRLSRNSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEGNEKLLVYEFMPNASLDFHLFDDEKRKELNWKLSLSIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGMARAFEIGQNQANTRRIMGTYGYMAPEYAMEGVFSVKSDVFSFGVLVLEIISGKKNTGFYLSEHGRSLLLYTWKKWCEGNCLDIMHSVLGKTCIDNEVVRCINIGLLCVQEDAADRPTMSTVVVMLASDTTALPKPKQPAFSIGRMTCDDNSTSKSSKTPSINDVTVSNIVPR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01577 653 FunFam Cysteine-rich receptor-like protein kinase 10 147 249 - -
Trre16g01577 653 ProSiteProfiles Gnk2-homologous domain profile. 31 138 IPR002902 -
Trre16g01577 653 Pfam Salt stress response/antifungal 189 247 IPR002902 -
Trre16g01577 653 Pfam Salt stress response/antifungal 38 135 IPR002902 -
Trre16g01577 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre16g01577 653 Gene3D - 32 138 IPR038408 -
Trre16g01577 653 Gene3D - 150 249 IPR038408 -
Trre16g01577 653 FunFam Cysteine-rich receptor-like protein kinase 28 34 137 - -
Trre16g01577 653 ProSiteProfiles Gnk2-homologous domain profile. 144 249 IPR002902 -
Trre16g01577 653 Gene3D Transferase(Phosphotransferase) domain 1 411 618 - -
Trre16g01577 653 ProSiteProfiles Protein kinase domain profile. 335 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01577 653 Pfam Domain of unknown function (DUF3403) 608 653 IPR021820 GO:0004674
Trre16g01577 653 FunFam Cysteine-rich receptor-like protein kinase 10 300 410 - -
Trre16g01577 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 649 - -
Trre16g01577 653 CDD STKc_IRAK 341 606 - -
Trre16g01577 653 SUPERFAMILY Protein kinase-like (PK-like) 314 606 IPR011009 -
Trre16g01577 653 Gene3D Phosphorylase Kinase; domain 1 298 410 - -
Trre16g01577 653 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Trre16g01577 653 Pfam Protein tyrosine and serine/threonine kinase 338 605 IPR001245 GO:0004672|GO:0006468
Trre16g01577 653 SMART serkin_6 335 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01577 653 FunFam Liguleless narrow1 411 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01577 Trre-Chr16 12559418 12563166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01577 12 653 Receptor kinase-like Gene Family AT4G05200 40.385 1.87e-170 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01577 PK_Tyr_Ser-Thr 9.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01577 - - cam:101497251 1010.36