Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01568 ATGATGAATCAAGTGGTTCAAGGTTTGAATGTTAGCGGCGATACTATGATGCAGCGTTCAACAATTGTTGATGATGTTTTGATCTTTGATTCTTTTGTCGGAAACAACAACATGATTTCTTCTTCACTATCAACAACATCAAGAAGCGTTGGAGTGAATCATCCATTCATGATGAATGATCATAATGTTCATAATGTTCATGTTCATGTTTCCAATGTTATGCCACCATGGTTGATGTTAGATCAAGCCATTGTCTTTGATTCTAACTCTATCAACAATATGGATCACCACAACCACCACAACCCGAATGTTACTCGAGTTAATCGTGTCAATTATCAAAATTTTCAACAACTTTTCATGACCATTGATGAAGATGAACCAACAACAACAGGGTCTTGTTCTTCAAAATCTGATTTAATGTGTTGCATATGTCTTACAGAGTTGTCTACCGGTTCCTCGGCCGCAGTTCGGATGCCTCAACATTGTTGTTCCCATGTATTTCACAGTGATTGCATTCAAGAGTGGCTAAATGTTAACATGACATGTCCTCTATGTCGCCGCGATGTTTAA 570 0.3789 MMNQVVQGLNVSGDTMMQRSTIVDDVLIFDSFVGNNNMISSSLSTTSRSVGVNHPFMMNDHNVHNVHVHVSNVMPPWLMLDQAIVFDSNSINNMDHHNHHNPNVTRVNRVNYQNFQQLFMTIDEDEPTTTGSCSSKSDLMCCICLTELSTGSSAAVRMPQHCCSHVFHSDCIQEWLNVNMTCPLCRRDV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01568 189 PANTHER TARGET OF ERK KINASE MPK-1 89 189 - -
Trre16g01568 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 189 IPR013083 -
Trre16g01568 189 ProSiteProfiles Zinc finger RING-type profile. 141 186 IPR001841 -
Trre16g01568 189 Pfam Ring finger domain 140 186 IPR001841 -
Trre16g01568 189 SUPERFAMILY RING/U-box 122 189 - -
Trre16g01568 189 SMART ring_2 141 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01568 Trre-Chr16 12436092 12436661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01568 120 186 C3H Transcription Factor Family AT1G14200 44.776 1.97e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01568 - - psat:127112616 84.7297