Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01566 ATGAAGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATTATGCAAGCTGATGAGGATGTTGGAAAGATAGCATTAGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTGTTTCTGCAAGATCTTTGTGATCGTACTTATGAAATAACTCTTCAAAGAGGAGCGAAAACCATGAACTCGTTGCATTTAAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTAAAGGATGTAGTTAGCAAGGTTCCTGACTACGGCCATGGTCATGGCCATACTGATGCTGGTGCTGATGATCATGCCATTTCAAAAAGAAGGAAAGCTGCAGGTGATGATGGTAATGAAAGCGACGAAGAAGTTAAGAGGGGCAAAATGCTTGAATTGGGCCACACTAGCCCGACTGGTAGGGGAAGAGGCCGAGGTAGAGGTAGAGGACGTGGTAGAGGTCGAGGACGAGCTATACCAAGAGAAGGACATCATCTGGACATTGAGTCTGAGCCTTGTCCGTCTGTTCAGCAAGTTAGCCAACATACTACAGATACAAACGTGGCTATACTTGATGGCTCAGAGTCAAATGAGTTACCAAAGCCGAGTGTTGTTATTCTTCCTGTTGATAACTCCGACTCACTCCTTAACATTGATCTGAATGCCAATATGAACGAAAATGATGACAAAAAGACTAGTGCAGTTGCTAATCTCACACCAGCTGATCCTGAACCTGCTAATCCGTCATTGTCTGAACCTCCTCCAACAGACATCAAGCATCATGAAGAAATTCCGGGCTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGATTCAATGCAGCTTGCACAGCTTGGTACGCGAATGGATGAGGATGATGAAGATTATGACGAGGAAGGGTAA 900 0.4422 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLKDVVSKVPDYGHGHGHTDAGADDHAISKRRKAAGDDGNESDEEVKRGKMLELGHTSPTGRGRGRGRGRGRGRGRGRAIPREGHHLDIESEPCPSVQQVSQHTTDTNVAILDGSESNELPKPSVVILPVDNSDSLLNIDLNANMNENDDKKTSAVANLTPADPEPANPSLSEPPPTDIKHHEEIPGWSLSDVDKMAIDSMQLAQLGTRMDEDDEDYDEEG 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01566 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 113 - -
Trre16g01566 299 FunFam dr1-associated corepressor homolog 1 86 - -
Trre16g01566 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre16g01566 299 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre16g01566 299 MobiDBLite consensus disorder prediction 94 130 - -
Trre16g01566 299 SUPERFAMILY Histone-fold 3 89 IPR009072 GO:0046982
Trre16g01566 299 MobiDBLite consensus disorder prediction 235 270 - -
Trre16g01566 299 MobiDBLite consensus disorder prediction 94 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01566 Trre-Chr16 12416403 12418668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01566 1 288 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.508 1.30e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre16g01566 CBFD_NFYB_HMF 2.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01566 K21752 - gmx:100801593 371.703