Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01562 ATGGCGATTGAAAAATCAAATTCCTTTGAGAATTGTAAACACTACATGGCTATGATATGTTTACAATTTGGCTATGCTGGTATGAATATTATCACTAAGGTTTCACTCAACCAAGGAATGAGCCACTATGTGCTCGTCGTTTATCGCCACGCTTTCGCAACTGCTTGTATAGCTCCATTTGCATTTATTCTTGAAAGGAAAGGTCAACCAAAAATAACATTCCGAATTTTCGTGCAAATTTTCATCTTAGCTCTTCTCGGGCCAGTGATTGATCAAAATTTCTATTATGCTGGGTTGAAGCTGACATCACCAACTTTTTCTTGTGCAATGAGTAACGTGCTTCCTGCTATGACTTTTGTGATGGCAGTTATATGCAGGATGGAGAAGATAAACATAAAGCAAGTAAGGTGCCAAGCAAAGATATTTGGAACACTATTGACAGTAGCTGGTGCAATGCTAATGACATTATACAAAGGTCCTATTATGGAGTTGTTTTGGGTCAAACATAGGCATCCTCAGCATGAAACACATGAAACAACCACCACAGGATCTTCTGAAAAAGATTGGATATTAGGATGCACTTTCCTTATCCTTGCTACCTTTGCTTGGGCTTGTCTCTTTGTTTTACAAGCAAAAGTTATAGAGACGTACAAGCATCATCAGCTAAGCCTAACTTCACTTATAGTCTTCATTGGTACTCTTCAAGCTATTGCTGTTACTTTTGTTGCTGAGCACAATCTTTCTGTTTGGAGGATCGGTTGGGATATGAGTTTACTTGCTGCTGCTTATGCTGGGATTGTGAACTCAAGCATGGCATACTATGTGCAAGGGCTGGTGATTAGGAAGAAAGGGCCTGTTTTTGCAACTGCCTTTAGCCCACTTATGATGATCATTGTTGCTGTCATGGGCTCCTTTATCCTAGCAGAAGATATTTATTTTGGAGGTGTGATAGGTGCCATCTTGATTGTGATAGGCTTATATTCTGTTCTTTGGGGAAAGCACAAGGAAGAAATAGAGAAAAAAGTAGATGACATTCCTTTGCCTATAAAGGGTACTCAAATGAGTGGAAATTCAGGGCCAGTGATTGATGACACAAATCAAGTAAAACATGATCAAGTTGGAGATACTAACAATATGCTTTCTTCACTTGCAATAAGTATGCCTGCTAGACAGCCTACTAATAATGTTAACCAACAATAA 1200 0.3892 MAIEKSNSFENCKHYMAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATACIAPFAFILERKGQPKITFRIFVQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTFVMAVICRMEKINIKQVRCQAKIFGTLLTVAGAMLMTLYKGPIMELFWVKHRHPQHETHETTTTGSSEKDWILGCTFLILATFAWACLFVLQAKVIETYKHHQLSLTSLIVFIGTLQAIAVTFVAEHNLSVWRIGWDMSLLAAAYAGIVNSSMAYYVQGLVIRKKGPVFATAFSPLMMIIVAVMGSFILAEDIYFGGVIGAILIVIGLYSVLWGKHKEEIEKKVDDIPLPIKGTQMSGNSGPVIDDTNQVKHDQVGDTNNMLSSLAISMPARQPTNNVNQQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01562 399 Pfam EamA-like transporter family 16 155 IPR000620 GO:0016020
Trre16g01562 399 Pfam EamA-like transporter family 191 330 IPR000620 GO:0016020
Trre16g01562 399 PANTHER WAT1-RELATED PROTEIN 14 341 IPR030184 GO:0016020|GO:0022857
Trre16g01562 399 SUPERFAMILY Multidrug resistance efflux transporter EmrE 239 335 - -
Trre16g01562 399 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01562 Trre-Chr16 12396276 12399652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01562 1 391 Nodulin-like Gene Family AT5G07050 64.411 3.33e-178 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01562 - - gmx:100804390 585.489