Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01560 ATGGGGTATGCTGGCATCAGTTACAGTTCTCCTACACTTTCCTCTGCAATTGGAAATCTCATTCCCGCCTTCACCTTCATGTTAGCTGCCATTTGCAGGATGGAAAAGATAGCTATAAAAACTAGAACTACACAAGCTAAGGTTTGGGGAAGCATTATATCAATATCAGGTGGATTTATAGTGACTTTCTACAAAGGAAAATCAATTACCAATATTGCTCATAATTCCTCTTCCTTTCTTCTTCAACACTCAAATGGCATTGTTACATCAGTTGATATAAATTGGGTCATTGGTGGCCTTTTGCTGACAGTATCCAATATACTAATTACCATATGGTTCATTGTTCAGGCGGAAATCATGAAGGAGGTTCCAGATGAACTGACATCAGTCTTCTTTCACAACTTATTTGCAGCCATTTTGGCTTTATGTGTAGGTTTATTAGCAGAGACAAATAGTAGTCTTTGGAATATAAGACTAGACATATCACTGATCTCTATTGTCTGCACTGCAATATTTGGCAAGTTCCTGGGTAATGCAATATATGCTTGGGCAATACACTTAAAGGGTCCTGTATATGTAACAATGTTCAAGCCACTCTCAATTGTTATTGCTGTTGTCATGGGTATGGTGTTCCTTGGTGATACTCTTCATATTGGAAGTATAGTTGGAGCCACAATAATCTCAATAGGTCTTTATGTTGTATTATGGGGAAAAGCATTAGAAGTGATAGAGGAAGATGTTGGTACCTTGGAGTCACCATCTACAGAGAATGCACCTCTGTTGCAAAGTTATAGAACTGATCAAACTTTTGAAAAGAAAACAGATAGAAATGTTAAAAAGCACGGCCATCAAATCGAGATTCAACCGTGA 870 0.3782 MGYAGISYSSPTLSSAIGNLIPAFTFMLAAICRMEKIAIKTRTTQAKVWGSIISISGGFIVTFYKGKSITNIAHNSSSFLLQHSNGIVTSVDINWVIGGLLLTVSNILITIWFIVQAEIMKEVPDELTSVFFHNLFAAILALCVGLLAETNSSLWNIRLDISLISIVCTAIFGKFLGNAIYAWAIHLKGPVYVTMFKPLSIVIAVVMGMVFLGDTLHIGSIVGATIISIGLYVVLWGKALEVIEEDVGTLESPSTENAPLLQSYRTDQTFEKKTDRNVKKHGHQIEIQP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01560 289 PANTHER WAT1-RELATED PROTEIN 2 242 IPR030184 GO:0016020|GO:0022857
Trre16g01560 289 Pfam EamA-like transporter family 98 235 IPR000620 GO:0016020
Trre16g01560 289 SUPERFAMILY Multidrug resistance efflux transporter EmrE 139 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01560 Trre-Chr16 12366453 12369230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01560 1 268 Nodulin-like Gene Family AT3G28050 45.552 1.89e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01560 - - gmx:100811686 370.548