Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01559 ATGGAGGTGTTCAAAACAAAGGGTAGAGGTTGGGGGCTTCGAACACTGGATCCTATACGCGCTGGTACCTTTATTTGTGAGTATGCTGGAGAAGTTGTTGACAGAGATAAGACATATCAAAATGGGGGAGATTATGGTGAATATGTTTTCGATACAAGCCGTATTTATGTACCATTCACGTGGAATCATGATTCTAACTTATTGGAAGAAGTAAGTTCAAATGTTTCAAGCGAGGATTATACTATACCATCTCCTCTAATAAGTGCTAAGAATGTGGGAAATGTGGCTAGATTCATGAACCATAGTTGCTCCCCAAATGTGTTTTGGCAGCCAGTTTCATATGCAGAAAACAATCAATCCTTTCTCCACATTGCATTTTTTGCCTTTAGGCATATTCCTCCAATGGCAGAGTTGACATATGATTATGGACTTGTCCCTGTTGGTCGTGGTGCACTCAGAAGGAGAAAGAAATGCATGTGTGGATCGGAAAATTGCCGTGGTTTCTTTGGTTGA 513 0.4074 MEVFKTKGRGWGLRTLDPIRAGTFICEYAGEVVDRDKTYQNGGDYGEYVFDTSRIYVPFTWNHDSNLLEEVSSNVSSEDYTIPSPLISAKNVGNVARFMNHSCSPNVFWQPVSYAENNQSFLHIAFFAFRHIPPMAELTYDYGLVPVGRGALRRRKKCMCGSENCRGFFG 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01559 170 SUPERFAMILY SET domain 2 167 IPR046341 -
Trre16g01559 170 ProSiteProfiles Post-SET domain profile. 154 170 IPR003616 -
Trre16g01559 170 SMART set_7 1 149 IPR001214 GO:0005515
Trre16g01559 170 ProSiteProfiles SET domain profile. 1 143 IPR001214 GO:0005515
Trre16g01559 170 Gene3D SET domain 1 169 IPR046341 -
Trre16g01559 170 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 2 163 - -
Trre16g01559 170 Pfam SET domain 10 143 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01559 Trre-Chr16 12364912 12365424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01559 1 170 Su(var)3-9 homologs AT1G73100 58.286 3.22e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre16g01559 SET 5.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01559 K24405 - gmx:100817062 256.914