Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01546 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAATGTCAACCAGAATGTGCATTTGCACCTTATTTTCCACCTGATCAGCCACAAAAATTTGCAAATGTTCATAGAATTTTTGGAGCAAGTAATGTTACAAAGCTTCTCAATGATTTACATCCTCACCAACGTGAAGATGCAGTTAATTCACTTGCTTATGAAGCCGAAATGAGACTTCGCGATCCGGTTTACGGTTGTGTAGGTGTAATTTCTCTTCTTCAACATCAACTTCGTCAACTTCAAATGGATCTTTATTGCGCTAAATCCGAACTCTCGAGGTACCAAAATTTGAGTATCACGACTACTGCCGGTCATGGACTCATAACCGGCTTGACAGGTGAATCTGTCACGGCCGCGACTAATTACCACCACACGCAGAACGCTGGTGGTGGTAATAATAACAGTAACGGCCGTGACCGTGACCATCATTATCATCATCAATTTTTTCCAAGGGATCAACATCAACATAATTTGGTTAGAAATTTTGATGCTGGAATTGGGAACAACTATGATGCTAGTCTCTTGGCTATGAATATATCTGCCAGCTTAGGTCAGATTAATCAGCTTCAACACCATAGTGCTGCCGGCGGTGGTGGTGACGACCGCCGTACTGTTAACCGCTCCTAG 675 0.4311 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSITTTAGHGLITGLTGESVTAATNYHHTQNAGGGNNNSNGRDRDHHYHHQFFPRDQHQHNLVRNFDAGIGNNYDASLLAMNISASLGQINQLQHHSAAGGGGDDRRTVNRS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01546 224 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Trre16g01546 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 148 - -
Trre16g01546 224 MobiDBLite consensus disorder prediction 139 158 - -
Trre16g01546 224 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01546 Trre-Chr16 12245425 12246099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01546 2 224 AS2 family AT1G65620 60.987 1.13e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g01546 LOB 3.3e-42 No_clan