Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01544 ATGAATTCCATCCAAGTTCTCTCTACCACTACAATCAACACACCAAATCAAAAAACTTGTGATGACTCAAGTGATCATACAATCCATCTAACACCATGGGATCTCCAATTACTTCCATATGGAGTCAACCAAAAGGGTCTTCTTTATCACCACCCTTTGAACCTAGACACATCAAATCAAATCGAACACCTTAAACACTCTCTTTCATCCACTCTTGAAATGTTTCCACCCTTTACCGGTCGTCTCAAAATCCAGGAACACGAAGATAATACTATCTCGTGTTTCATCACGTGCAACAATGAAGGTGCACTTTTTGTCCACGCTGTAGCAGAAAACACTGGTGTTGAAGACATTCTTGGATCCACTTATGTTCCTCAAATTCTCCACTCATTTTTTCCACTTAATGGCATTAAAAACTACGAAGGGACATCAAATCCATTATTCGCGGTCCAAGTAACAGAGCTAGATAACGGCATCTTCATTGGTTGCACAATTAATCATGTGGTTGCTGATGGTACGTCGATTTGGCAATTCATCAATTCATGGGCCAAAATCTCAAAGGGTTGTCTTGAAATGACCAAAATTCCATCATTTGAACGTTGGTTTCCAAATGGTATTCAACTTCCAATTAGATTTCCTTTCACAATGGAACATCAAAATAATCTCTATAATAATGATAATCATAAAGAAGACAACCCCAATCCACCAGAGAGGTTATTTCATTTCCCAAAAGAGAATATTGCAAAACTAAAATTCAAAGCCAATTTAGAGGCTGGTACAAAGAACATATCTTCTTTGCAAGCACTTTTAACTCACATTTGGAGATCTATTATACGTTCCAAAAATCTTGACCCAGAAGAAGAAGTGAATTTTGTGGTGCTTATAGGCATTAGACCAAGGTTGATTCCTCCTTTGAAAGAGGATTATTTTGGGAACGCTTTAATAGATTGTGTGGTAACCATGAAAGCTCGTGATTTGTTGGAAGACGGTGGCCTTGGTAAAGGTGCTTTCGAAATGAACAAGATGATTGCTTTGCACTCTGATGAGAAGTTGAAAAATCAGTATGAGAATTGGTTGAAAACACCGAGTTTTGTCAATGTTGGTATGTCCAATAAAAAAACATTAGTGATCAGTTCACCTAGGTTTGATGTTTATGCTAACGATTTTGGTTGGGGAAAACCAGTGGCGGTTCGACATGGGGGTGAAAATAAAGAAAATGGAGTTATTAGTGTGTTTGCAGGTGTAGAAGAAGGTAGTATGGATCTTGCAGTCTGTTTTTCTTATGAAACTTTGGAGGCAATTTGTAATGATTCTGAGTTTATGGAGGCTGTGTCCAACTAA 1341 0.3788 MNSIQVLSTTTINTPNQKTCDDSSDHTIHLTPWDLQLLPYGVNQKGLLYHHPLNLDTSNQIEHLKHSLSSTLEMFPPFTGRLKIQEHEDNTISCFITCNNEGALFVHAVAENTGVEDILGSTYVPQILHSFFPLNGIKNYEGTSNPLFAVQVTELDNGIFIGCTINHVVADGTSIWQFINSWAKISKGCLEMTKIPSFERWFPNGIQLPIRFPFTMEHQNNLYNNDNHKEDNPNPPERLFHFPKENIAKLKFKANLEAGTKNISSLQALLTHIWRSIIRSKNLDPEEEVNFVVLIGIRPRLIPPLKEDYFGNALIDCVVTMKARDLLEDGGLGKGAFEMNKMIALHSDEKLKNQYENWLKTPSFVNVGMSNKKTLVISSPRFDVYANDFGWGKPVAVRHGGENKENGVISVFAGVEEGSMDLAVCFSYETLEAICNDSEFMEAVSN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01544 446 Gene3D - 214 435 IPR023213 -
Trre16g01544 446 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 442 - -
Trre16g01544 446 Pfam Transferase family 20 441 - -
Trre16g01544 446 Gene3D - 2 209 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01544 Trre-Chr16 12218074 12219414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01544 64 432 Monolignol Biosynthesis Gene Families AT5G48930 27.202 1.03e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01544 - - psat:127075665 520.776