Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01534 ATGAGTCCTCCAGCTGAATTGGAGATGGAAGATACTAAGCCCTTTGTTGCAGTGGTCGATAATGGTGACCAAGCTGAGTCTCGGTTCGCTGAATTCTCCAAGAATGAGCTAGCATTGGATGAGAAAAGCTGTAAAGAAGCAATGGATCTGTTTGGAGAAACAAAACATCTTCTCTTGGCAAATGTTTCATCAATCGGGAATGGAACGACAGAAGAAGCTGAGCGGTACTGGTTTGCTTTTATTTTATACTCTATCAAGAGACTGGCTCAGAAAAATGAGGAGAGTAGAAAGGGAGAGACTGAGAATACTGGGCTTACCTTGTGTCGAATATTGAGAGCAGCAAAGCTTAACGTTCCAGATTTTTTTAAAGAACTTCCTCAGTTTGTTGTCAAGGCTGGTCCAATTTTAAGCAATCTATATGGCTCGGATTGGGAAAACAGGCTTGAGGCAAAGGAAATGCAAGCTAACACCATTCATTTGAAGGCTCTTAGCAAGTATTATAAGCGGGTATTTGAAGAGTTCTTTGTGTCAACTGATGCAAATATCGAAAATAACTCATCTGTTACCACCAATAATGTATCTGAGTACCACCGTTTTGGATGGTTACTTTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCCATCTTGGCTATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAATTTCAACATTCACGACTCTTCGCGATTTGTTAAGAAAAGTAGCAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATATAACAGTTCAGAAGATGAGTTGAGGAAAACCATGGAGCAAGCCAATAATTTAGTAGCAGATATATTGAAGAAGAAACCCTGTTTGGCATCTGAATGCAAAACTGAAAACCTAGAGAATTTTGATAAAGATGGTTTAACCTATTTTAAAGATCTGATGGAGGAATCATCTCTGCTATCTAGTTTGAATATCTTAGAAAAAGATTATGATCACATGACTCGCAACAAGGGTGAGCTCGATGAAAGGTTATTCATTAATGAGGATGACAGTCTGTTAGCTTCAGGAAGTTTAGGAAGTTTTACCGGAGGTTCTGTTTCAACAGGGGGTGGAAAGAGGAAATTTGATTTGATGACATCACCTGCTAAGACCATTGCAAGTCCACTTTCACCCCACCGCTCTCCTGCTTCCCATACTAATGGCATTCCGGGTAGTGCAAATTCAAAGATTGCTGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTCCGCACTGTCATTTCTCCACTCCCATCAAAACCCTCACATGAGCTAGAGCGATTCTTGACATCATGTGACAGGGATATTACAAGTGATGTAGTACGCAGAGCACAGATTATATTGCAAGCTATATTTCCTAGTAGTCCCCTTGGGGACCGATGTGTAACTGGAATCCTGCAAAGTGCTAACCTCATGGACAATATATGGGCAGAACAACGAAGATTAGAAGCGATGAAGTTCTACTATAGGGTATTGGCAACAATGTGCAGAGCAGAAGCTCAAATACTTGGCAACAATTTAACTCCACTGCTTACTAATGAAAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCTTGGCTACTCACAAGACTGTGACAATGTTGTTCCCTGCTGTACTGGAGAGGACTGGAATTACAGCTTTTGATCTTAGCAAGGTGATCGAAAGTTTCATTAGACATGAAGAATCTCTCCCAAGAGAACTGAGGCGACATCTTAATTCATTGGAGGAACGACTTTTGGAGAGCTTGGTATGGGAAAAGGGTTCTTCAATGTATAATTCATTAGCAGTCGCTAGACCTGCCCTTTCTGCAGAGATCAATCGACTTGGTCTGTTAGCCGAACCAATGCCATCATTAGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGACTGCCTCCTGTGCCTTCCTTGCCTAAGCCTGAGACTTTGCCAGCTCAAAATGGGGACCCCAGATCACCAAAGCGGCTCTGTACAGAATATCGAAATGTGTTGGTGGAACGAAATTCTTTTACTTCACCGGTGAAAGATCGGCTTCTTCACTTAAGCAACCTTAAGTCAAAACTACTCCCACCTCCATTGCAATCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAGCGTATTTTTCAGCAAGATTGTTAAGTTGGGAGCTGTCAGAATAAGCGGAATGGTTGAAAGACTTCAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATTCTAAATCAATGGACATCTCTCTTCTTCAACCGTCATATTGACCAAATCATTTTGTGTTGCTTCTATGGAGTTGCAAAGATTTCACAGCTGAACCTAACTTTTAGGGAGATTATATACAACTATAGGAAGCAACCGCAATGCAAGCCACAGGTTTTTCGTAGTGTATTTGTTGACTGGTCCTTGGCGCGCCGCAATGGGTTATCTAGACAAAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAATGAAGTTTTCATTCCCTCTGTGAAACCACTTCTGGTTGAACTTGGCCCTGGTGGAGCAACTATGAGAAGTGATCAACCACCTGAAGCTAACAACAAAAATGACGGCCATTTAGTTCAAAATCCTGGCTCTCCTAGAATATCACCTTTCCCAAGCCTTCCTGATATGTCACCTAAAAAAGTGTCTGCCACACACAATGTGTATGTCTCTCCATTACGATCATCCAAGATGGATGCTCTAATTTCACATAGCTCCAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCCTATCAGAGCCCTTCAAAAGACCTAACTGCCATAAACAATCGGTTAAACAGCAACCGGAAAGTAAGAGGAACGCTCAAATTTGATGACGTCGATGTGGGCTTGGTTAGTGACTCTATGGTTGCAAAAAGCCTCTATCTGCAGAATGGAAGTTCTGGGTCATCATCTGGTGCACCATTGAAGTCCGAGCAACCTGACTCTTAA 3093 0.4216 MSPPAELEMEDTKPFVAVVDNGDQAESRFAEFSKNELALDEKSCKEAMDLFGETKHLLLANVSSIGNGTTEEAERYWFAFILYSIKRLAQKNEESRKGETENTGLTLCRILRAAKLNVPDFFKELPQFVVKAGPILSNLYGSDWENRLEAKEMQANTIHLKALSKYYKRVFEEFFVSTDANIENNSSVTTNNVSEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSSKGVDLLASLCNIYNSSEDELRKTMEQANNLVADILKKKPCLASECKTENLENFDKDGLTYFKDLMEESSLLSSLNILEKDYDHMTRNKGELDERLFINEDDSLLASGSLGSFTGGSVSTGGGKRKFDLMTSPAKTIASPLSPHRSPASHTNGIPGSANSKIAATPVSTAMTTAKWLRTVISPLPSKPSHELERFLTSCDRDITSDVVRRAQIILQAIFPSSPLGDRCVTGILQSANLMDNIWAEQRRLEAMKFYYRVLATMCRAEAQILGNNLTPLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPSLPKPETLPAQNGDPRSPKRLCTEYRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSLARRNGLSRQRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATMRSDQPPEANNKNDGHLVQNPGSPRISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKVRGTLKFDDVDVGLVSDSMVAKSLYLQNGSSGSSSGAPLKSEQPDS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01534 1030 FunFam Retinoblastoma-related protein 1 196 354 - -
Trre16g01534 1030 Coils Coil 330 350 - -
Trre16g01534 1030 Gene3D - 706 899 - -
Trre16g01534 1030 FunFam Retinoblastoma-related protein 1 694 911 - -
Trre16g01534 1030 SUPERFAMILY Cyclin-like 742 917 IPR036915 -
Trre16g01534 1030 Gene3D - 423 610 - -
Trre16g01534 1030 Pfam Retinoblastoma-associated protein A domain 420 620 IPR002720 GO:0005634|GO:0051726
Trre16g01534 1030 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 1028 IPR028309 GO:0006357|GO:0051726
Trre16g01534 1030 SUPERFAMILY Cyclin-like 428 622 IPR036915 -
Trre16g01534 1030 CDD CYCLIN_AtRBR_like 744 879 - -
Trre16g01534 1030 Coils Coil 269 293 - -
Trre16g01534 1030 SMART RB_A_2 420 620 IPR002720 GO:0005634|GO:0051726
Trre16g01534 1030 Pfam Retinoblastoma-associated protein B domain 744 875 IPR002719 GO:0005634|GO:0051726
Trre16g01534 1030 Pfam Domain of unknown function (DUF3452) 100 235 IPR024599 -
Trre16g01534 1030 Gene3D - 196 354 - -
Trre16g01534 1030 MobiDBLite consensus disorder prediction 392 415 - -
Trre16g01534 1030 SMART DUF3452_2 86 235 IPR024599 -
Trre16g01534 1030 FunFam Retinoblastoma-related protein 1 423 610 - -
Trre16g01534 1030 MobiDBLite consensus disorder prediction 885 924 - -
Trre16g01534 1030 MobiDBLite consensus disorder prediction 891 907 - -
Trre16g01534 1030 MobiDBLite consensus disorder prediction 1011 1030 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01534 Trre-Chr16 12123629 12130295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01534 9 1030 Core Cell Cycle Gene Families AT3G12280 69.700 0.0 1415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Trre16g01534 RB_A 2.2e-61 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01534 K04681 - gmx:100779266 1683.69