Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01524 ATGGGTTCTTCAGTAGGAGGTAATGGTGTGGAGTGGCACGTGCGTCCTCCAAACCCTAAAAACCCAATCGTCTTCTTCGATGTCACCATCGGTAACATTCCCGCCGGTAGAATCAAAATGGAACTCTTCGCTGATATTGCCCCCAAAACCGCTGAGAATTTCAGGCAATTCTGCACGGGGGAGTACAGGAAAGCAGGACTTCCTATTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTATGTAAAGGGTGATGGTAGTGGATGTGCTTCAATCTATGGACTTAAGTTTGACGATGAGAATTTCACTGCCAAACACACTGGACCTGGTCTTCTATCAATGGCAAATAGCGGACCGAATACCAATGGCTGTCAGTTCTTCATAACCTGTGCAAAATGTGACTGGCTGGACAACAAGCATGTCGTTTTTGGGAGAGTACTTGGAGACGGTCTTTTGGTCGTGAGGAAGATTGAGAATGTTGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGTGTCATTGCTGAATGTGGTGAAATGTAA 570 0.4491 MGSSVGGNGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPIGYKGCQFHRVIKDFMIQAGDYVKGDGSGCASIYGLKFDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01524 189 CDD cyclophilin_ABH_like 22 187 - -
Trre16g01524 189 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 71 88 IPR020892 GO:0003755|GO:0006457
Trre16g01524 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 88 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 162 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 146 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 24 189 - -
Trre16g01524 189 FunFam Peptidyl-prolyl cis-trans isomerase 11 189 - -
Trre16g01524 189 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 26 187 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 Gene3D - 11 189 IPR029000 -
Trre16g01524 189 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 25 188 IPR002130 GO:0000413|GO:0003755
Trre16g01524 189 SUPERFAMILY Cyclophilin-like 12 189 IPR029000 -
Trre16g01524 189 PIRSF Peptidylpro_ismrse 12 189 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01524 Trre-Chr16 12020842 12026823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01524 18 187 U-box Gene Family AT5G67530 42.442 2.06e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01524 K09567 - gmx:100813835 382.489