Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01522 ATGGGAAGTAGAATCCGAGTTGGTGTTGAAGATGAGAAGGGAGCCGAAACAGGCATGCCGAGCTTCAATTCCGACGATGCACGCTATACAGAGGGGAACGCAGTTGATACTTTTCATGTTTCTGACTTTGGAGCATTTGGTCAACCATATCGTTTAGAGGATGCTGTTGTTCTGAGTGGAAATTCAAACTCGGTTTTTAACTCAATTAAAGTAAGTAGCCGAACTATTTCTCCTGGCCCTGTTCACACCAGTACTTTGCCAACATCACTTGATAAAGGCCCATCGACGAACCAAACAGAACCGCATAGGTTGCAATTAACAAATCTTCAATCATCAAACACCGGCAGTGGTAACATATTAAGTGTTCGTACAGAAAACCAGGAAGAGTTTGCCATGGCCGATGCCAGTCCTAGGACTGATATTTCAACAGATGGTGACACCGATGACAAGAATCAGCGGTTTGATAGAAATCAATCTCTTGCTCCTGTGGGTTCTGACTCCAGTGATAGATCAAAGGATAAATCAGATCAAAAGACTCTCCGCAGGCTCGCTCAGAATCGTGAGGCGGCAAGAAAAAGCCGGTTGAGAAAGAAAGCCTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTCGACAACAGGGAGTCTTCATATCAAGTTCGGGTGAACAAACTCATTCAATGAGTGGAAATGGGGCAATGCAATTTGATGCAGAATATGCAAGATGGCTGGAAGAGCAGAATCGACAAATTAATGAACTGAGAGCAGCTGTCAATTCTCATGCAAGTGATACCGAACTTCGCATGATTGTTGATGGTATATTGGCACATTATGATGATATTTTTAGGCTGAAAGGTGTTGCAGCTAAGGCCGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACACCTGCTGAGAGGTGTTTTTTATGGCTCGGTGGTTTTCGCTCGTCTGAACTTCTCAAGCTTCTGGTAAGTCAATTGGAACCTCTCACAGAGCAGCAGTTGATGGGTATTACCAACTTGCAACAATCCTCCCAACAAGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTACAACAGTCCCTTGCAGAGACATTGTCCACTGGCGCACCTTCCTCATCTTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAGCTTGGGACACTCGAGGGTTTCATTCGACAGGCTGACAATCTGCGCCAGCAGACGCTACAACAAATGCACCGAATATTGACAACACGGCAATCAGCTCGCGCACTCCTTGCCATACATGATTACTTTTCGCGGCTGCGTGCTCTCAGCTCTCTCTGGCTGGCCCGTCCAAGAGATTAA 1395 0.4588 MGSRIRVGVEDEKGAETGMPSFNSDDARYTEGNAVDTFHVSDFGAFGQPYRLEDAVVLSGNSNSVFNSIKVSSRTISPGPVHTSTLPTSLDKGPSTNQTEPHRLQLTNLQSSNTGSGNILSVRTENQEEFAMADASPRTDISTDGDTDDKNQRFDRNQSLAPVGSDSSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQTHSMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGILAHYDDIFRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVSQLEPLTEQQLMGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGAPSSSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01522 464 Coils Coil 197 224 - -
Trre16g01522 464 Coils Coil 254 274 - -
Trre16g01522 464 MobiDBLite consensus disorder prediction 131 180 - -
Trre16g01522 464 Gene3D - 177 226 - -
Trre16g01522 464 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Trre16g01522 464 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Trre16g01522 464 MobiDBLite consensus disorder prediction 141 155 - -
Trre16g01522 464 FunFam BZIP family transcription factor 177 226 - -
Trre16g01522 464 MobiDBLite consensus disorder prediction 74 100 - -
Trre16g01522 464 Pfam Seed dormancy control 260 336 IPR025422 GO:0006351|GO:0043565
Trre16g01522 464 CDD bZIP_HBP1b-like 178 230 - -
Trre16g01522 464 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Trre16g01522 464 PANTHER TRANSCRIPTION FACTOR TGA9 130 463 - -
Trre16g01522 464 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Trre16g01522 464 Pfam Basic region leucine zipper 174 220 IPR004827 GO:0003700|GO:0006355
Trre16g01522 464 MobiDBLite consensus disorder prediction 1 28 - -
Trre16g01522 464 ProSiteProfiles DOG1 domain profile. 243 461 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01522 Trre-Chr16 12005491 12011348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01522 132 464 bZIP Transcription Factor Family AT3G12250 78.679 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre16g01522 DOG1 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01522 K14431 - gmx:100101881 728.398