Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01517 ATGGGGCCATTGAGGACTGCTATTAAAGAAGCATGTGAGAAAACATTCTCAATTGTAAAGTTCTTATGCGTTATACATGTTACGAAAAACTACCTGATTGACCCTGTTATGACTTATGGTCCTAGCATGCTTCCTACAATGGATTTGACACCAAACATCTTTCTTGCTGAAAAGATCTCAACTCGATTTGGTAAAGTTGCTCATGGAGATATTGTAGTTCATCGCTCACCTCAGAACCCTCGCAAGATCTTCACGAAGCGCCTGGTTGGATTAGAGGGTGATACCATTACATATGTTTCTGATCCCGATAACGATGATAAGCATGAAACAGTTGTGGTTCCAAAGGGTCATGTTTGGATACAGGGCGATAACAAATATAATAGCAACGATTCTAGAAATTTTGGTCCAATTCCGTATGGCCTTATTGAGAGCAAGATATTCTGGAGGGTATCGCCACTTAAAGATTTTGGATCGTTCTGGAAAAAATGA 489 0.3988 MGPLRTAIKEACEKTFSIVKFLCVIHVTKNYLIDPVMTYGPSMLPTMDLTPNIFLAEKISTRFGKVAHGDIVVHRSPQNPRKIFTKRLVGLEGDTITYVSDPDNDDKHETVVVPKGHVWIQGDNKYNSNDSRNFGPIPYGLIESKIFWRVSPLKDFGSFWKK 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01517 162 PRINTS Bacterial leader peptidase 1 (S26A) family signature 84 96 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre16g01517 162 PRINTS Bacterial leader peptidase 1 (S26A) family signature 113 132 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre16g01517 162 PRINTS Bacterial leader peptidase 1 (S26A) family signature 31 47 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre16g01517 162 SUPERFAMILY LexA/Signal peptidase 31 160 IPR036286 -
Trre16g01517 162 Gene3D Umud Fragment, subunit A 28 162 - -
Trre16g01517 162 FunFam Inner membrane protease subunit 1 29 158 - -
Trre16g01517 162 Pfam Signal peptidase, peptidase S26 109 147 IPR019533 GO:0004252|GO:0006465
Trre16g01517 162 Pfam Signal peptidase, peptidase S26 17 99 IPR019533 GO:0004252|GO:0006465
Trre16g01517 162 CDD S26_SPase_I 35 146 IPR019533 GO:0004252|GO:0006465
Trre16g01517 162 ProSitePatterns Signal peptidases I signature 3. 118 131 IPR019758 GO:0004252|GO:0016020
Trre16g01517 162 NCBIfam signal peptidase I 17 99 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre16g01517 162 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01517 Trre-Chr16 11964999 11970616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01517 43 157 MADS-box Gene Family AT1G29960 54.783 1.38e-43 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01517 K09647 - cave:132170793 213.772