Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01516 ATGGAAACATTCACTACCTTGCGTGGTCCAAAGCCCTTAACATATGACGTCTTCATCAGCTGCGGTGATGACACTCTCTTCAGTTTCACCGGCTTTCTCGCTCATTCTCTCAACGATCGGGGATTCTATACATGTATTAATCATACTGAATCTATTCATAACTGTAAGATTTTCATTTTCATTATATCTCATGGTTATGTGTCTCGATTAGATCAACTTGTCAATATCATGGATCAATTTGCAAAGGGGAATTATGGTCCACGACGATGGATTTTGCCTGTTTTCTATCATGTCAATCCCTCTGATGTTCGAAATCAGACTGGTGCTTTTGGAGAAGCATTCGATTCTGTTTGTAAGAATTTTCTCATTCATGATCGTGACAGGTTCCAAAACTTGATCAGTCTTCTTCGTCAAGTAGCTGACTTTTATGGCTGGCATCTTGATCGAGCCAGGGGTATATATGAACACCAGTACATTGACGAGATTCTTCAAGAGGTCTCTAAACATGTGGCTTGCTCAATTGGCCTAGATCGTCGAATAGAGAAAGTTATGGATTGTTTGAATTCTGGATCCAATGATGATAGAGTCCGTGTAGTAGGGATATATGGAGATCCTGGACTAGGAAAAACAACACTAGCTCGTGGAGTTTATCACTTCGGTGGCGGCATCGAATTTGACTATTGTTGTTTCTTTGATAAGGTGGGCAAGTATGTCATGAAACATGGATTAGTACATCTCCTACGGATGCTTCTCTATGAAATAGTTGGACACCACAACAGTACTATGTTTGAAAATGTGGATGAAGGGATGTTGTCGACGATAAAACATATGCTCAACCAAAAGAAGGTTTTCTTGATTCTTGAAGACATTCATAATTCAGAGGTCTTCAAAGTCATTGTTCAACTAACTACTTTCGTTGGTTCTGGTAGCAGATTCATTATTACTACTAAGGATAAATATCTGTTACAACTTCATGGGATTGAAAGAATATTCGAGGTAGAAAGACTGGACAACAAAGAGGCTTTTCAGTTTCTTAATTTGAAAGCTTTCAATTCTATGAATTTTAAACCCAGTAATTTGCGCATTTTAGAACGAGCAGCAACTTATGCTTCTGGGCATCCATTCGTTTTGGAGATAATAGGTTCCCATTTGAGTGGAAAAGGTGCAGAAGAATGTGAATCTGCATTAGGTCAATATGAAATGATTCCAAATCATGAGATCCAAAAGATACTTCAAATAAGCTTTGATGCCTTGGGGAAATATCGCCAGAGAATGTTAATTCGCATTGTAATCCAGCTCCAAGGACGGGAATTGGGACAGGTTGAAGACACACTTCATAAATTTTATGGCGTCTGCCCAAAAATAGATATAAGAGTGTTGCTTGATAAATCTTTTATAAAGATTAATGAGCTTGGCCAGGTGACATTACATTGTCTGACACTTGATATGGTTAGATATAATGCCTCCCTAGAATATCCCCGCAAACATAGTAGGTTGCCTACGGACATTCTAGAAGAAAATATGGAATATTCCTGCAAACGTAGTAGGTTTTCTAAGGACACTTTAGATGAAAATATGGAATATCACAAGCAAGAAATTCGGCCCTCCTCAAATGATGGAAGCATGATTAGGGATCCGATGGAGTTTGAATATCAACTTTTTTCTTCCTCCTCTTCTCAAAGTTCCATTCTCCATACTTCCGAGGTAAACATACAATACAATGGCATATGA 1731 0.3842 METFTTLRGPKPLTYDVFISCGDDTLFSFTGFLAHSLNDRGFYTCINHTESIHNCKIFIFIISHGYVSRLDQLVNIMDQFAKGNYGPRRWILPVFYHVNPSDVRNQTGAFGEAFDSVCKNFLIHDRDRFQNLISLLRQVADFYGWHLDRARGIYEHQYIDEILQEVSKHVACSIGLDRRIEKVMDCLNSGSNDDRVRVVGIYGDPGLGKTTLARGVYHFGGGIEFDYCCFFDKVGKYVMKHGLVHLLRMLLYEIVGHHNSTMFENVDEGMLSTIKHMLNQKKVFLILEDIHNSEVFKVIVQLTTFVGSGSRFIITTKDKYLLQLHGIERIFEVERLDNKEAFQFLNLKAFNSMNFKPSNLRILERAATYASGHPFVLEIIGSHLSGKGAEECESALGQYEMIPNHEIQKILQISFDALGKYRQRMLIRIVIQLQGRELGQVEDTLHKFYGVCPKIDIRVLLDKSFIKINELGQVTLHCLTLDMVRYNASLEYPRKHSRLPTDILEENMEYSCKRSRFSKDTLDENMEYHKQEIRPSSNDGSMIRDPMEFEYQLFSSSSSQSSILHTSEVNIQYNGI 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01516 576 SUPERFAMILY "Winged helix" DNA-binding domain 406 475 IPR036390 -
Trre16g01516 576 Gene3D - 166 329 IPR027417 -
Trre16g01516 576 Pfam TIR domain 15 121 IPR000157 GO:0007165
Trre16g01516 576 PRINTS Disease resistance protein signature 198 213 - -
Trre16g01516 576 PRINTS Disease resistance protein signature 370 384 - -
Trre16g01516 576 PRINTS Disease resistance protein signature 277 291 - -
Trre16g01516 576 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 145 IPR035897 -
Trre16g01516 576 Gene3D - 335 419 IPR042197 -
Trre16g01516 576 Gene3D - 13 165 IPR035897 -
Trre16g01516 576 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 501 IPR044974 GO:0006952
Trre16g01516 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 427 IPR027417 -
Trre16g01516 576 Pfam NB-ARC domain 178 389 IPR002182 GO:0043531
Trre16g01516 576 ProSiteProfiles TIR domain profile. 1 170 IPR000157 GO:0007165
Trre16g01516 576 SMART till_3 14 142 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01516 Trre-Chr16 11960299 11962428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01516 174 527 WRKY Transcription Factor Family AT5G45050 28.997 7.44e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01516 - - mtr:11445264 806.594