Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01506 ATGGCGGTTTCAGCTACTTCGTCCTCTCTATCCTATGATGTTTTCATTAGCTTCAGAGGAGAAGATACTCGCCTAGGTTTTACTGGATTTCTCTACAAGACTCTTTCTGACAGAGGAATCCGAACTTTCTTTGACCACCACGCTGCGGAGGAACCGATTAAGGCAATTGAAGAATCCAAGAGTGGGGTTTATGCACAAGCAATGAACGTGCATAAGGAAAATAGCTTCGATTCTGAGAAATTGATGAAATGGAAGGATGCTCTTAAACAAGCAGCTAACTTCTCCGGTTGTCATTTTAAACATGGGGATGGATATGAATATGAGTTAATTGAGAGGATCGTAGATGTGGACATGGGTAGAGAAATCGTAAGACAGGAATCACCCAACAACCCTGGCAAACGCAGTAGGCTATGGTTTACTAAGGATATCGTTGAAGTTTTAGAAAAAGACACAGGAACAAGTGAAATTCAAACCATCATTCTGGACTTCCCCAAATATGAAAAAGTGAGCTGTCCAAGTCAAAGAAGTTCGTAA 534 0.412 MAVSATSSSLSYDVFISFRGEDTRLGFTGFLYKTLSDRGIRTFFDHHAAEEPIKAIEESKSGVYAQAMNVHKENSFDSEKLMKWKDALKQAANFSGCHFKHGDGYEYELIERIVDVDMGREIVRQESPNNPGKRSRLWFTKDIVEVLEKDTGTSEIQTIILDFPKYEKVSCPSQRSS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01506 177 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 115 IPR044974 GO:0006952
Trre16g01506 177 Pfam TIR domain 12 61 IPR000157 GO:0007165
Trre16g01506 177 Gene3D - 4 61 IPR035897 -
Trre16g01506 177 Gene3D - 62 122 IPR035897 -
Trre16g01506 177 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 97 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01506 Trre-Chr16 11872153 11875682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01506 119 163 WRKY Transcription Factor Family AT4G12020 60.000 2.72e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01506 - - ahf:112802991 122.094