Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01503 ATGGAAAACAATCGCCGCACCGTCCGAACCTTAGTTTCTAAACTCAGCTCCGTTTCCGAACGAACACGAATCGAAGCACTCTGCGAGCTTCGGTTAATGTCAAAACAAGATCCACAAACCCGACCCATAATAACCGAATCGGGTGCAATCCCTTACTTAGCAGAAACTCTCTATTCATCTTCTCACCCTTCCCAAGAAAACGCCACCGCAACACTTCTCAATCTTTCGATAACAGAAAAAGAATCTATCATGTCCACGCGCGGTGTTCTCGACGCGCTTTCACATATAATTTCTCATCATTCTTCAACTTCCGCCGCCGCCGCCGTTCAATCAGCTTCCGCCACGATTCACAGCCTTCTTTCCTCGGTAGATGATTATCGAACCGTTGTTGGATCTAAACGTGAAATCGTTTACGCGCTTGTTGATATTCTCCGATGTCATAGATCATCACCGCCTAGAACGGTGAAAGATGCGTTGAAAGCGCTTTTCGCGATCGCGCTTCATCCGTTAAACCGTGCTACTATGGTTCAATTCGGCGTTGTTCCGGCGCTTTTTTCTCTAATTGTTAACGACGGAAGAGTAGGGATAGTTGAAGACGCAACCGCCGTGATCGCGCAGGTTGCCGGTTGTGAGGAAAGCGTTGAAGCTTTCCGGAAGGTTTCTGGTGTTGGAGTGCTTGCGGATCTGCTTGATCTTAATACTGGTTCTAGTATGCGGACGAGAGAAAATGCGGTGTCGGCGTTGCTTAATCTTGTCCGGTGCGGCGGAGATGCGGTGGCCGGAGATGTTAGAGACGCAGTTGCTTTCGGTGCGTTGGATGGAATCGCCGATGTTAGAGATAAAGGTAGCCTTAAGGGACAGAGTAAAGCTATGGAGTTGATGAGAGTGATGCTTGGTGGTGGTGATAGGAATGTCGTTTTGAATAGTGGTTCGTCGTTTGGTTCTTCTGTGATGAATGATGATAGTGGTACGTCGTTTTGA 981 0.4801 MENNRRTVRTLVSKLSSVSERTRIEALCELRLMSKQDPQTRPIITESGAIPYLAETLYSSSHPSQENATATLLNLSITEKESIMSTRGVLDALSHIISHHSSTSAAAAVQSASATIHSLLSSVDDYRTVVGSKREIVYALVDILRCHRSSPPRTVKDALKALFAIALHPLNRATMVQFGVVPALFSLIVNDGRVGIVEDATAVIAQVAGCEESVEAFRKVSGVGVLADLLDLNTGSSMRTRENAVSALLNLVRCGGDAVAGDVRDAVAFGALDGIADVRDKGSLKGQSKAMELMRVMLGGGDRNVVLNSGSSFGSSVMNDDSGTSF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01503 326 Gene3D - 1 280 IPR011989 -
Trre16g01503 326 SUPERFAMILY ARM repeat 7 297 IPR016024 -
Trre16g01503 326 SMART arm_5 210 253 IPR000225 GO:0005515
Trre16g01503 326 SMART arm_5 122 167 IPR000225 GO:0005515
Trre16g01503 326 SMART arm_5 37 77 IPR000225 GO:0005515
Trre16g01503 326 SMART arm_5 168 209 IPR000225 GO:0005515
Trre16g01503 326 PANTHER U BOX DOMAIN-CONTAINING 7 297 - -
Trre16g01503 326 FunFam ARM repeat superfamily protein 2 302 - -
Trre16g01503 326 Pfam Armadillo/beta-catenin-like repeat 38 76 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01503 Trre-Chr16 11855961 11856941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01503 8 294 U-box Gene Family AT2G23140 33.333 2.47e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01503 - - gmx:100787115 440.654