Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01493 ATGGCGGTTGAATTGGTTGGTGGTGCTCTTCTTTCTGCTTCCCTTGGTGTCACATTTGAAAAACTGGCTTCTGCTGAAATTGGAGACTACTTTAGAAGAAGAAAACTCAATGAGTTGCTTCTTAAGAAACTCAACATCACACTTCTCACAATTAATGCTGTCGTCGATGATGCAGAAATGAAGCAGATTAGAAATCAACATGTGAAAGTATGGCTTGATGCTGTCAAAGATGCTGTGTTAGAAGCAGAGGATCTCTTGGATGAAATTGACATTGAAGTTTCTAGATGCAAGCTCGAAGCGGAATCTCAATCCAGTAATATTACTAGCAAGGTATGGAATTTCTTTAATGCTTCTTCCAGTTCATTTGACAAAGAAATTGAATTAAAGATGCATGAAATCCTTGACAACCTAGAATATCTTGCTAGTAAAAAGGATATACTAGATTTGAGAGCAACTAGTAGTCGTTTTGGTGTTGAATCAAGTAGCCAAATGTCAATAAAATTGCCATCAACATCTTTGCCGGCTGATTCTGCTATTTATGGTAGAGATGTTGAGACTGAGGTTATTTGTGATTGGCTGACATCTGACACTGAGAATGATAACCGTCAACTGTCGATTATTTCTATAGTTGGTATGGGTGGGATGGGCAAGACCACACTTGCCCAACACTTATACAATGACCGAAAGATGGAGGTTATATTTGATGTCAAAGTTTGGGTCTCTGTGTCACAAGAATTTGATGTTTTCAAGGTAATGAGAGCTACTCTTGAGGGTATCACTGGATCAACTGATGATAGTAGAGACCTAAACATGGTCCAAGAAAGATTGAAGGAAAAATTGACTGGGAAAAGATTTCTACTTGTTTTGGATGACATTTGGAATGAAAACCTTTTGCAATGGGAAGCTTTGAAGACTCCTTTTAAATATGGGGCTGTGGATAGCAAAATTCTTGTCACTACACGCAGTCTAAAAGTTGCTTCAATCATGCGAGCAGACAAACAAATTCAACTAGAGCAATTAGAAGAAGAACATTGCTGGCATTTATTTTCCAAACATGCTTTCCAAGATGAAAATCCTCAAATAAACCATGACTCAAAGGAGATTGCTAGAAGGATAGTCAAAAAATGCCAAGGATTGCCTCTAGCCTTGAAAACAATTGGAAGTCTCTTCTACACAAAATCATCTTTTGTAGAGTGGGAAAGCATATTGGCAAGTGAGATATGGGATTTATCTGAAGATGAGTGCAACATCATCCCCGCTTTAATGTTGAGCTATCATCACCTTCCTTCCCCTCTTAAAAGATGTTTTGCGTATTGTGCCTTATTCCCTAAAAACTACCTGTTTGAAAAGGACAATTTAATTTTATTATGGCTGGCTGAAAGTTTTCTACAATGCCCTCGACATAACATGAGTATGGAAGAAGTTGGTGAACTATACTTCAATGATCTATTTTCGAGGTCATTTTTCCAAAAATCAAGGGAACATGATATGCGCTTTATCATGCATGATCTTCTCAATGATTTGGCAAAATATATATGCGGGGATTTTTGCTTTACATTCAATAATAAGGAATCACATCAGATATTGAACACGACTCGCCATTTGTCATTATTGGAAAATTCACATAAAAGAATGAAGACATTACACAATGCTAATAGATTACGCACATTTCTACCTCTTTGGTTGGCATTGGAGGAAGGTACAAGTAAGCAGTGGATGTCTAGCACAATGATGCAGGAGTTGTTCTCAAAGTTTAAGTTCTTTCGTGTATTGTCATTGTCTGGTTTCGTCATTGAGAATGAGTTGCTTGGCACAATAAGCAATCTCAAGCATCTTCGTTATCTAGACCTTTCTAGTACCAACGTAAAAAAGCTACCTGACTCCATTTGTTCTCTCTATAACTTGCAAACACTGAAATTGAGGGATTGTCGGTATTTAGAGGAGTTGCCCTTGAATTTACTTAAACTCACTAATTTGCGTTATCTTGATTTTAGCGGAACAAAGGTGAGAAAAATGCCAATGGATGTGGGAAAACTAAAGAATCTTCAAGTATTGAGTTCGTTTTATGTGGGAAAAGGTATTGATGCCAATATTCAACAGTTAGGAGAACTCAATCTTCATGGAACACTATCAATTTCAGGGCTGCAAAATATTGTAAATCCCAGTGATGCATCGGCAGCAAATTTGAAAAATAAAGTACACCTTGTGAAGCTAGAGTTAGAATGGAACGAAAACATTGATAATTCAGAGAAAGATAGGGAAGTGTTGGAGAAGCTACAACCTTCCAAACACATGAAGGACTTATCAGTCTGCAGCTATGGTGGTACACGATTTCCAGATTGGTTTGGAGATAGTTCATTATCAAATGTGGTGTCATTAAAGTTGAGCAATTGTGAAAATTGTGTGTTGTTGCCTCCACTCGGAATTTTGTCATCTCTCGAGGAACTTTGGCTCATAGGGCTATCTGGGATAGTGGTAGTTGGTAGTGAATTTTATGGGAATGGAAGTAGCTCCTCTTCAGCTATTCTTCCATTTGCATCCTTGAAAATCTTAAAATTTGAGAATATGCAGGGATGGGAAGTGTGGGATTGTAAAAATGTGACGGGTGCTTTTTCGTGTCTCCAAAAGCTTTTCATAAATAATTGTCCGTATCTAAAAGAGTGTTTGCCTGAGCAACTTCCTTGTTTATTGAAACTAAAAATTACTAATTGCAGCCAGCTTGTGGCTTCTGTTCCATTGGCTCCATCCATTGATCGGTTACATGTAATTAATTGTGGAGAATTGGATTTTGATTATCAACCATCTACTCTTAGAGTTCTCACAATTGGTGGCATGGAAGGATCCTTGCTTGAATTGGTTAGGGACACCTTATCATGCATGTCACTCGAATCATTGATAATTAGGGACTGCCCAACTATGAACATTCCCCTAAGCGGTTGTTACAATTTCCTTGAATATTTATACATCGAATATAGTTGCGACTCTTTAAGGACCTTTCCGCTGGTTTTCTTCCCAAAACTCCAACATCTCGATTTCCAGTATTGTAGTAATCTTGAAATGATTTCACTGGAGCACGATAATAGCCTTAAACATCTGTCTATTTATGGTTGTCCTAAATTTGTATCATTTTCTATGGGAAGATCCTCTGCACCAAGGCTAGAAAATCTTGAGCTTCATAATTTGGAGAATATAAAATCCTTGCCTCTCTTTCCATCTCTTAATAGGCTAGTTATATCGAATTGTCCACATCTGGAATCGTTCTCTGATGGAAGTTTGCCATCAAACCTGAAAAGGTTGAATCTTGATGGATGCTCCGATATTTTCATGGCCTCATTGAAACCGGCTTTGCAAATCAACACTTCCCTAAAATTTATGTTTCTTGATAATATGGACGTGGAGTCTTTTCCGGATATCGGGCTGCTTCCCCGCTCTCTTACTTATCTGTCTATCAGTAGTTGTGTGAATCTTAAAAAACTGGACTACGAGGGTCTCTGCCGCCCCTCCTCTCTCGAGTCATTGTGTCTCAGTTGTTGCCCCAACCTTCAATGCTTACCAGTGGAGGGTCTGCCTAAATCCATTTCAGATCTATCAATTAGTGGTCCTTCGGTTCTCCAAGAACGATACATGAAACCTAACGGTGAAGAGTGGGGGAAGATTTCTCACATTCAATGTGTGGTGATCAATGACGTCGTAATAAATTGA 3702 0.3836 MAVELVGGALLSASLGVTFEKLASAEIGDYFRRRKLNELLLKKLNITLLTINAVVDDAEMKQIRNQHVKVWLDAVKDAVLEAEDLLDEIDIEVSRCKLEAESQSSNITSKVWNFFNASSSSFDKEIELKMHEILDNLEYLASKKDILDLRATSSRFGVESSSQMSIKLPSTSLPADSAIYGRDVETEVICDWLTSDTENDNRQLSIISIVGMGGMGKTTLAQHLYNDRKMEVIFDVKVWVSVSQEFDVFKVMRATLEGITGSTDDSRDLNMVQERLKEKLTGKRFLLVLDDIWNENLLQWEALKTPFKYGAVDSKILVTTRSLKVASIMRADKQIQLEQLEEEHCWHLFSKHAFQDENPQINHDSKEIARRIVKKCQGLPLALKTIGSLFYTKSSFVEWESILASEIWDLSEDECNIIPALMLSYHHLPSPLKRCFAYCALFPKNYLFEKDNLILLWLAESFLQCPRHNMSMEEVGELYFNDLFSRSFFQKSREHDMRFIMHDLLNDLAKYICGDFCFTFNNKESHQILNTTRHLSLLENSHKRMKTLHNANRLRTFLPLWLALEEGTSKQWMSSTMMQELFSKFKFFRVLSLSGFVIENELLGTISNLKHLRYLDLSSTNVKKLPDSICSLYNLQTLKLRDCRYLEELPLNLLKLTNLRYLDFSGTKVRKMPMDVGKLKNLQVLSSFYVGKGIDANIQQLGELNLHGTLSISGLQNIVNPSDASAANLKNKVHLVKLELEWNENIDNSEKDREVLEKLQPSKHMKDLSVCSYGGTRFPDWFGDSSLSNVVSLKLSNCENCVLLPPLGILSSLEELWLIGLSGIVVVGSEFYGNGSSSSSAILPFASLKILKFENMQGWEVWDCKNVTGAFSCLQKLFINNCPYLKECLPEQLPCLLKLKITNCSQLVASVPLAPSIDRLHVINCGELDFDYQPSTLRVLTIGGMEGSLLELVRDTLSCMSLESLIIRDCPTMNIPLSGCYNFLEYLYIEYSCDSLRTFPLVFFPKLQHLDFQYCSNLEMISLEHDNSLKHLSIYGCPKFVSFSMGRSSAPRLENLELHNLENIKSLPLFPSLNRLVISNCPHLESFSDGSLPSNLKRLNLDGCSDIFMASLKPALQINTSLKFMFLDNMDVESFPDIGLLPRSLTYLSISSCVNLKKLDYEGLCRPSSLESLCLSCCPNLQCLPVEGLPKSISDLSISGPSVLQERYMKPNGEEWGKISHIQCVVINDVVIN 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01493 1233 FunFam Probable disease resistance protein At1g63360 425 511 - -
Trre16g01493 1233 Gene3D Ribonuclease Inhibitor 927 1229 IPR032675 -
Trre16g01493 1233 Coils Coil 72 92 - -
Trre16g01493 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 439 IPR027417 -
Trre16g01493 1233 FunFam Probable disease resistance protein At1g61300 163 334 - -
Trre16g01493 1233 Coils Coil 323 343 - -
Trre16g01493 1233 Gene3D Ribonuclease Inhibitor 562 926 IPR032675 -
Trre16g01493 1233 Gene3D - 15 132 - -
Trre16g01493 1233 Gene3D - 339 423 IPR042197 -
Trre16g01493 1233 Pfam NB-ARC domain 198 404 IPR002182 GO:0043531
Trre16g01493 1233 Gene3D - 160 336 IPR027417 -
Trre16g01493 1233 Pfam Rx N-terminal domain 14 103 IPR041118 -
Trre16g01493 1233 SUPERFAMILY L domain-like 501 907 - -
Trre16g01493 1233 PANTHER DISEASE RESISTANCE PROTEIN RP 41 904 IPR044974 GO:0006952
Trre16g01493 1233 PRINTS Disease resistance protein signature 206 221 - -
Trre16g01493 1233 PRINTS Disease resistance protein signature 279 293 - -
Trre16g01493 1233 PRINTS Disease resistance protein signature 376 390 - -
Trre16g01493 1233 PRINTS Disease resistance protein signature 607 623 - -
Trre16g01493 1233 SUPERFAMILY L domain-like 919 1212 - -
Trre16g01493 1233 Gene3D - 424 511 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01493 Trre-Chr16 11775020 11778721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01493 207 729 WRKY Transcription Factor Family AT5G45050 24.042 3.02e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01493 - - gmx:100781012 1205.66