Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01488 ATGAACATGTTAGGCTTAAGAGACTTAGTTGTCATAGCTCAAACTCCTTCATCTCTTCACAACCAACAAAACCAACCCATTTCATCACATCATCATCCCAACCTTCCCTTACCTTCATCATCATCATCATCTCATAGCGTTGGTCTTGGAATTTTCCCACTCCTAACTACTACTACTCATCCTCATCATCAAAATCACAACCAAAACAATGATACTAATAATATTCATGATCAAGACTCAAACTTTTGGAATCTCAAGATGTCTCAACCACAACAACTCATCATGATGAATTCCACAAAAAAAAGGGTTGAAGAAGAAGAAGAAAATATTAATGGTGGTGGTGATTTTAGGGTGTGTTTGGATTGTGGAAACAGAGCTAAGAAAGATTGTAGTTTTAAAAGATGTAGGACTTGTTGTAAAGGTCGTGGTTTTGATTGTAGTACTCACGTGAAGAGCACGTGGGTACCGGCTTCGTTGCGACGAGACCGGAAAATGGTGGTGGCTGAAGGTGGTGGTGACAGTGGTGGTGGTGGTTCTTCTGGTACTAAGAGGCAGAGGATTTTGGTTTCATCATCACATAATGCTGCTACTTCTCATAGTTCTAGTTCTAATGCTGCTACAAGAAGCTTAAGCTTAGATATTACTAGCTCTTGTCACCAAGATGCTAGCTTCAAACAATCTTTGCCACGTTATGTTCGAGCACCTGCTGTTTTGAAGTGCCATAGAGTTTCTGCTATTGGCAATGGTGAAGATGAACTTGCTTATTTAGCCACAGTGAATATTAGTGGTCATGTCTTCAAAGGGTTTCTTTATGATCAAGGTATTATTGATGCAAAAAATGAAACAATGCCTTGTGTTTCAGAACTTCAACTTGGAAGTAATGGCAGTGGAAAGAGTTATAGGGAATGTTCTTCTTCTGCAATTCAGGTTCCAACTAGTGCATATCCTGCATCTGCTTGTTAA 963 0.3946 MNMLGLRDLVVIAQTPSSLHNQQNQPISSHHHPNLPLPSSSSSSHSVGLGIFPLLTTTTHPHHQNHNQNNDTNNIHDQDSNFWNLKMSQPQQLIMMNSTKKRVEEEEENINGGGDFRVCLDCGNRAKKDCSFKRCRTCCKGRGFDCSTHVKSTWVPASLRRDRKMVVAEGGGDSGGGGSSGTKRQRILVSSSHNAATSHSSSSNAATRSLSLDITSSCHQDASFKQSLPRYVRAPAVLKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGIIDAKNETMPCVSELQLGSNGSGKSYRECSSSAIQVPTSAYPASAC 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01488 320 MobiDBLite consensus disorder prediction 56 79 - -
Trre16g01488 320 MobiDBLite consensus disorder prediction 19 44 - -
Trre16g01488 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 33 304 IPR007818 GO:0003700|GO:0006355
Trre16g01488 320 Pfam Domain of unknown function (DUF702) 118 275 - -
Trre16g01488 320 NCBIfam putative zinc finger domain, LRP1 type 118 159 IPR006510 -
Trre16g01488 320 NCBIfam LRP1 C-terminal domain 228 275 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01488 Trre-Chr16 11729498 11731586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01488 1 307 C2H2 Transcription Factor Family AT5G12330 40.952 1.31e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre16g01488 DUF702 1.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01488 - - gmx:100790311 304.293