Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01484 ATGGGTAATCAATACCGTTCAGGAAACGGGCAGAATGAAGACAACAATCGAGTTCGTGATGCTAGAGCTCTAAGATATCTATTGGCTAATAATTCTGCAAATAATTCTTCTTTTGTTGGTGTCAATAATCGCAGTATCGTAAGAGGATCAAGAACCACCAGAGTTCAATCAATTCATGAACTTATCAACCTTCGACAAGTTCGTGGAAACACAAACACAACCAATACTTTTGGTCACGATGATGGTGGTGATCATCACTATCCCACTCCTATTATATTACCAACAACTACTACTATTAACAATTATAATGATAATCGTGCTTCTTCTTCCTCTTTCGTGTCTGCAAGACATCTTGGATCAACTTTGACCACCACCAGTAGAGGTAATAACAACATGTCATCATTATTAGGTTTACCATCTGTGTTATATCCAAATATTGGAGGACAACCTGCAGGACCCGCTGCTCTATATAACAACAACAATCTAAGTGGTGGAGCTGTAGGAAACAGTAGCAATAATAGTAATCCTATTTTGAATAATGGTAGAATTAACAATGATGCTGCTACTGGCGCTGCTGATCCTATTAGGAATGACGACCTTGGGCGCTCTTTATCCTTAAAGAGAAGTAGATCATATGATCAATTTTTGAGAGGCGATAATTATGGTCAAAGCTCACAAAATGTTGGAACCTCTAGAAGAAGACTAATAATTCCTCATATTTGTCCTCATCAAGACAGTCACAACATGTCTTCTTCAACTTCATACACATCACATGGGCACTATAGTGGTAATAGTGTCATTTCTAATATGTTGAACCGAAACATGATGAATCAAGCTATTGTTGCAGGTGCAAGACAGAGTAGTACTAGCACTACTCAGTCTCACATTAATAGTCGTATAGAAAGTCGTGGTCAAACAAGTTTTATTGATCTACCATATCAATCTAGTTCTACTAATGAGCCAATTGATATTAATCGATTTTTGTTCCTACCTCGACAAGTCCATCCTTTGAATAACTTCATCAGCAGAAGATATGATCCTTCAGCTACCTCTGGATCATCTTTCTATACCTCTACAACGACAAGAGGGTTGTTAGGAACATCTCAAACTGCCACACCTTTCCACTTATACTACAATTTCACGTCTTCTGCAACTGGTGGTGGTGGTTCTTCTTTTGGAAGCACAAGTTCAGGACAAAATCATAGTAATAATAACAACAACTTTGATTTCTTTGATAGTTTTCATCGCGAAATTGATGATGTATTTAGTCATAGCACAATAAGTATTCAAGAATATGCAAGGGTATTGCCAAGTGGTCGTCTGTATCGATTTTTAGCCCCAACTCTTGTTCCCGTGCAGCTTAGTAGTTCTGTACCACCGCAACGACCACTGCCGATTTCAGACCCTTCACCGAACAATTACCGGCTAAACCTTCCTCCACCTTCTTCCGGATTGAGGTTTAGTACTACTTTAGAAGCTAATCAGTATGTGCAGACTAGTTCAACACTGACAAGATCAGTGGATCGAGTTCGTCTTGGAGGTCATTATAACCACATTTTTGTTTCAAATTTTTCTGATCTTATGGCAGAGAGGAACGAACTCATGAATGAGTTGGCGACTCACTTTAGAAGGGTCAATGTGGGACTGACGGAGGGAGAGATTCTCACGTTCATTCAACAAGAAACATTTCAAACAAGTCTTGAAGAGACCAACACCCAGAACCAAACTTGCACCATATGTCAGGAAGCCTATGTGGATGGAGAGCGGATTGGAAAAATAAATTGTATGCACATATATCACCTTGACTGTATCAAACAATGGTTGATGCAAGAGAATATATGTCCAATATGTCGGCATATAGCTTTGGAAATTGGTCATGAAGAGGAGGATGAAATTCAACGACAATGA 1908 0.3899 MGNQYRSGNGQNEDNNRVRDARALRYLLANNSANNSSFVGVNNRSIVRGSRTTRVQSIHELINLRQVRGNTNTTNTFGHDDGGDHHYPTPIILPTTTTINNYNDNRASSSSFVSARHLGSTLTTTSRGNNNMSSLLGLPSVLYPNIGGQPAGPAALYNNNNLSGGAVGNSSNNSNPILNNGRINNDAATGAADPIRNDDLGRSLSLKRSRSYDQFLRGDNYGQSSQNVGTSRRRLIIPHICPHQDSHNMSSSTSYTSHGHYSGNSVISNMLNRNMMNQAIVAGARQSSTSTTQSHINSRIESRGQTSFIDLPYQSSSTNEPIDINRFLFLPRQVHPLNNFISRRYDPSATSGSSFYTSTTTRGLLGTSQTATPFHLYYNFTSSATGGGGSSFGSTSSGQNHSNNNNNFDFFDSFHREIDDVFSHSTISIQEYARVLPSGRLYRFLAPTLVPVQLSSSVPPQRPLPISDPSPNNYRLNLPPPSSGLRFSTTLEANQYVQTSSTLTRSVDRVRLGGHYNHIFVSNFSDLMAERNELMNELATHFRRVNVGLTEGEILTFIQQETFQTSLEETNTQNQTCTICQEAYVDGERIGKINCMHIYHLDCIKQWLMQENICPICRHIALEIGHEEEDEIQRQ 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01484 635 ProSiteProfiles Zinc finger RING-type profile. 577 618 IPR001841 -
Trre16g01484 635 SMART ring_2 577 617 IPR001841 -
Trre16g01484 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 544 621 IPR013083 -
Trre16g01484 635 MobiDBLite consensus disorder prediction 455 474 - -
Trre16g01484 635 Pfam Ring finger domain 576 618 IPR001841 -
Trre16g01484 635 SUPERFAMILY RING/U-box 558 623 - -
Trre16g01484 635 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 368 622 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01484 Trre-Chr16 11651811 11655102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01484 533 623 C3H Transcription Factor Family AT2G15530 39.362 1.72e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01484 - - tpra:123896003 571.237